Genetic testing strategies in the newborn

被引:13
作者
Carroll, Jeanne [1 ,2 ,3 ]
Wigby, Kristen [1 ,3 ,4 ]
Murray, Sarah [5 ,6 ]
机构
[1] Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
[2] Rady Childrens Hosp, Div Neonatol, San Diego, CA 92123 USA
[3] Rady Childrens Inst Genom Med, San Diego, CA 92123 USA
[4] Rady Childrens Hosp, Div Genet Dysmorphol, San Diego, CA USA
[5] Univ Calif San Diego, Dept Pathol, La Jolla, CA 92093 USA
[6] Univ Calif San Diego Hlth, Ctr Adv Lab Med, La Jolla, CA USA
关键词
JOINT CONSENSUS RECOMMENDATION; CLINVAR PUBLIC ARCHIVE; MEDICAL GENETICS; AMERICAN-COLLEGE; LABORATORY STANDARDS; EXOME; VARIANTS; ACMG; CARE; STATEMENT;
D O I
10.1038/s41372-020-0697-y
中图分类号
R71 [妇产科学];
学科分类号
100211 ;
摘要
Genetic disorders presenting in the neonatal period can have a significant impact on morbidity and mortality. Early diagnosis can facilitate timely prognostic counseling to families and possibility of precision care, which could improve outcome. As availability of diagnostic testing expands, the required knowledge base of the neonatologist must also expand to include proper application and understanding of genetic testing modalities, especially where availability of clinical genetics consultation is limited. Herein, we review genetic tests utilized in the neonatal intensive care unit (NICU) providing background on the technology, clinical indications, advantages, and limitations of the tests. This review will span from classic cytogenetics to the evolving role of next generation sequencing and its impact on the management of neonatal disease.
引用
收藏
页码:1007 / 1016
页数:10
相关论文
共 56 条
[1]  
ACMG Board of Directors, 2013, Genet Med, V15, P748, DOI 10.1038/gim.2013.94
[2]   A method and server for predicting damaging missense mutations [J].
Adzhubei, Ivan A. ;
Schmidt, Steffen ;
Peshkin, Leonid ;
Ramensky, Vasily E. ;
Gerasimova, Anna ;
Bork, Peer ;
Kondrashov, Alexey S. ;
Sunyaev, Shamil R. .
NATURE METHODS, 2010, 7 (04) :248-249
[3]   College of American Pathologists' Laboratory Standards for Next-Generation Sequencing Clinical Tests [J].
Aziz, Nazneen ;
Zhao, Qin ;
Bry, Lynn ;
Driscoll, Denise K. ;
Funke, Birgit ;
Gibson, Jane S. ;
Grody, Wayne W. ;
Hegde, Madhuri R. ;
Hoeltge, Gerald A. ;
Leonard, Debra G. B. ;
Merker, Jason D. ;
Nagarajan, Rakesh ;
Palicki, Linda A. ;
Robetorye, Ryan S. ;
Schrijver, Iris ;
Weck, Karen E. ;
Voelkerding, Karl V. .
ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE, 2015, 139 (04) :481-493
[4]   Whole-Genome Sequencing for Optimized Patient Management [J].
Bainbridge, Matthew N. ;
Wiszniewski, Wojciech ;
Murdock, David R. ;
Friedman, Jennifer ;
Gonzaga-Jauregui, Claudia ;
Newsham, Irene ;
Reid, Jeffrey G. ;
Fink, John K. ;
Morgan, Margaret B. ;
Gingras, Marie-Claude ;
Muzny, Donna M. ;
Hoang, Linh D. ;
Yousaf, Shahed ;
Lupski, James R. ;
Gibbs, Richard A. .
SCIENCE TRANSLATIONAL MEDICINE, 2011, 3 (87)
[5]   Detection of low-level mosaicism by array CGH in routine diagnostic specimens [J].
Balliff, Blake C. ;
Rorem, Emily A. ;
Sundin, Kyle ;
Lincicum, Matt ;
Gaskin, Shannon ;
Coppinger, Justine ;
Kashork, Catherine D. ;
Shaffer, Lisa G. ;
Bejjani, Bassem A. .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2006, 140A (24) :2757-2767
[6]   Exome sequencing as a tool for Mendelian disease gene discovery [J].
Bamshad, Michael J. ;
Ng, Sarah B. ;
Bigham, Abigail W. ;
Tabor, Holly K. ;
Emond, Mary J. ;
Nickerson, Deborah A. ;
Shendure, Jay .
NATURE REVIEWS GENETICS, 2011, 12 (11) :745-755
[7]   Civilian and Military Genetics: Nondiscrimination Policy in a Post-GINA World [J].
Baruch, Susannah ;
Hudson, Kathy .
AMERICAN JOURNAL OF HUMAN GENETICS, 2008, 83 (04) :435-444
[8]   Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants [J].
Belkadi, Aziz ;
Bolze, Alexandre ;
Itan, Yuval ;
Cobat, Aurelie ;
Vincent, Quentin B. ;
Antipenko, Alexander ;
Shang, Lei ;
Boisson, Bertrand ;
Casanova, Jean-Laurent ;
Abel, Laurent .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (17) :5473-5478
[9]   Targeted gene panel sequencing for the rapid diagnosis of acutely ill infants [J].
Brunelli, Luca ;
Jenkins, Sabrina M. ;
Gudgeon, James M. ;
Bleyl, Steven B. ;
Miller, Christine E. ;
Tvrdik, Tatiana ;
Dames, Shale A. ;
Ostrander, Betsy ;
Daboub, Josue A. F. ;
Zielinski, Brandon A. ;
Zinkhan, Erin K. ;
Underhill, Hunter R. ;
Wilson, Theodore ;
Bonkowsky, Joshua L. ;
Yost, Christian C. ;
Botto, Lorenzo D. ;
Jenkins, Justin ;
Pysher, Theodore J. ;
Bayrak-Toydemir, Pinar ;
Mao, Rong .
MOLECULAR GENETICS & GENOMIC MEDICINE, 2019, 7 (07)
[10]   Fluorescence In situ Hybridization: Cell-Based Genetic Diagnostic and Research Applications [J].
Cui, Chenghua ;
Shu, Wei ;
Li, Peining .
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2016, 4