Phosphate triester hydrolysis promoted by an N2S(thiolate)Zn complex:: Mechanistic implications for the metal-dependent reactivity of peptide deformylase

被引:21
作者
Goldberg, DP
diTargiani, RC
Namuswe, F
Minnihan, EC
Chang, S
Zakharov, LN
Rheingold, AL
机构
[1] Johns Hopkins Univ, Dept Chem, Baltimore, MD 21218 USA
[2] Univ Calif San Diego, Dept Chem & Biochem, La Jolla, CA 92093 USA
关键词
D O I
10.1021/ic0511571
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
The zinc(II) complex (PATH)ZnOH, where PATH is an N2S(thiolate) ligand, has been investigated for its ability to promote the hydrolysis of the phosphate triester tris(4-nitrophenyl) phosphate (TNP). The hydrolysis of TNP was examined as a function of PATH-zinc(II) complex concentration, substrate concentration, and pH in a water/ethanol mixture (66:33 v/v) at 25 degrees C. The reaction is first order in both zinc(II) complex and substrate, and the second-order rate constants were derived from linear plots of the observed pseudo-first-order rate constants versus zinc complex concentration at different pH values. A pH-rate profile yielded a kinetic pK(a) of 8.52(5) for the zinc-bound water molecule and a pH-independent rate constant of 16.1(7) M-1 s(-1). Temperature-dependent studies showed linear Eyring behavior, yielding the activation parameters Delta H-double dagger = 36.9(1) U mol(-1) and Delta S-double dagger = -106.7(4) J mol(-1) K-1. Interpretation of the kinetic data leads to the conclusion that hydrolysis of TNP takes place through a hybrid mechanism, in which the metal center plays a dual role of providing a nucleophilic hydroxide and activating the substrate through a Lewis acid effect. The synthesis and structural characterization of the related nickel(II) and iron(II) complexes [(PATH)(2)Ni-2]Br-2 (2) and (PATH)(2)Fe2Cl2 (3) are also described. Taken together, these data suggest a possible explanation for the low reactivity of the zinc(II) form of peptide deformylase as compared to the iron(II) form.
引用
收藏
页码:7559 / 7569
页数:11
相关论文
共 63 条
[1]   SYNTHESIS, STRUCTURE, AND SPECTROSCOPIC PROPERTIES OF COPPER(II) COMPOUNDS CONTAINING NITROGEN SULFUR DONOR LIGANDS - THE CRYSTAL AND MOLECULAR-STRUCTURE OF AQUA[1,7-BIS(N-METHYLBENZIMIDAZOL-2'-YL)-2,6-DITHIAHEPTANE]COPPER(II) PERCHLORATE [J].
ADDISON, AW ;
RAO, TN ;
REEDIJK, J ;
VANRIJN, J ;
VERSCHOOR, GC .
JOURNAL OF THE CHEMICAL SOCIETY-DALTON TRANSACTIONS, 1984, (07) :1349-1356
[2]   Crystal structure of type II peptide deformylase from Staphylococcus aureus [J].
Baldwin, ET ;
Harris, MS ;
Yem, AW ;
Wolfe, CL ;
Vosters, AF ;
Curry, KA ;
Murray, RW ;
Bock, JH ;
Marshall, VP ;
Cialdella, JI ;
Merchant, MH ;
Choi, G ;
Deibel, MR .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (34) :31163-31171
[3]   INTERPRETATION OF PH MEASUREMENTS IN ALCOHOL-WATER SOLVENTS [J].
BATES, RG ;
BAABO, M ;
ROBINSON, RA .
JOURNAL OF PHYSICAL CHEMISTRY, 1963, 67 (09) :1833-&
[4]   Carboxy and phosphate esters cleavage with mono- and dinuclear zinc(II) macrocyclic complexes in aqueous solution, crystal structure of [Zn(2)L1(mu-PP)(2)(MeOH)(2)](ClO4)(2) (L1=[30]aneN(6)O(4), PP- equals diphenyl phosphate) [J].
Bazzicalupi, C ;
Bencini, A ;
Bianchi, A ;
Fusi, V ;
Giorgi, C ;
Paoletti, P ;
Valtancoli, B ;
Zanchi, D .
INORGANIC CHEMISTRY, 1997, 36 (13) :2784-2790
[5]   Communication - Structure of peptide deformylase and identification of the substrate binding site [J].
Becker, A ;
Schlichting, I ;
Kabsch, W ;
Schultz, S ;
Wagner, AFV .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (19) :11413-11416
[6]   Iron center, substrate recognition and mechanism of peptide deformylase [J].
Becker, A ;
Schlichting, I ;
Kabsch, W ;
Groche, D ;
Schultz, S ;
Wagner, AFV .
NATURE STRUCTURAL BIOLOGY, 1998, 5 (12) :1053-1058
[7]   Recent studies of nucleophilic, general-acid, and metal ion catalysis of phosphate diester hydrolysis [J].
Blaskó, A ;
Bruice, TC .
ACCOUNTS OF CHEMICAL RESEARCH, 1999, 32 (06) :475-484
[8]   HYDRATION OF ZINC IONS - A COMPARISON WITH MAGNESIUM AND BERYLLIUM IONS [J].
BOCK, CW ;
KATZ, AK ;
GLUSKER, JP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (13) :3754-3763
[9]   The ligand effect on the hydrolytic reactivity of Zn(II) complexes toward phosphate diesters [J].
Bonfá, L ;
Gatos, M ;
Mancin, F ;
Tecilla, P ;
Toneliato, U .
INORGANIC CHEMISTRY, 2003, 42 (12) :3943-3949
[10]   Crystal structure of the Escherichia coli peptide deformylase [J].
Chan, MK ;
Gong, WM ;
Rajagopalan, PTR ;
Hao, B ;
Tsai, CM ;
Pei, DH .
BIOCHEMISTRY, 1997, 36 (45) :13904-13909