The complete mitochondrial genome of Saccostrea malabonensis (Ostreida: Ostreidae): characterization and phylogenetic position

被引：2

作者：

Mu, Wendan ^{[1
]}

机构：

[1] Minist Nat Resources, Inst Oceanog 4, Beihai 536000, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 11期

关键词：

Saccostrea malabonensis; mitochondrial genome; phylogenetic analysis; SEQUENCE; ORGANIZATION; SELECTION; BIVALVIA; OYSTERS;

D O I：

10.1080/23802359.2022.2139160

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The taxonomy of the genus Saccostrea is very confused, however, there is relatively little molecular information available on Saccostrea. In this study, we determined and described for the first time the complete mitochondrial genome of Saccostrea malabonensis. The complete mitogenome of S. malabonensis is 16,204 bp in length, containing 12 protein-coding genes (lack of atp8 gene), two rRNA genes, 23 tRNA genes. The overall nucleotide composition of S. malabonensis has an AT content of 61.94% (26.29% A, 15.71% C, 22.35% G, 35.65% T). Phylogenetic analyses showed that S. malabonensis is first clustered with S. cucullata then united with Saccostrea kegaki.

引用

页码：1945 / 1947

页数：3

共 23 条

[1] MITOS: Improved de novo metazoan mitochondrial genome annotation [J].

Bernt, Matthias ;

Donath, Alexander ;

Juehling, Frank ;

Externbrink, Fabian ;

Florentz, Catherine ;

Fritzsch, Guido ;

Puetz, Joern ;

Middendorf, Martin ;

Stadler, Peter F. .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319

[2] Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis [J].

Boore, JL ;

Medina, M ;

Rosenberg, LA .

MOLECULAR BIOLOGY AND EVOLUTION, 2004, 21 (08) :1492-1503

[3] Evidence that the large noncoding sequence is the main control region of maternally and paternally transmitted mitochondrial genomes of the marine mussel (Mytilus spp.) [J].

Cao, LQ ;

Kenchington, E ;

Zouros, E ;

Rodakis, GC .

GENETICS, 2004, 167 (02) :835-850

[4] Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis [J].

Castresana, J .

MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (04) :540-552

[5] ProtTest 3: fast selection of best-fit models of protein evolution [J].

Darriba, Diego ;

Taboada, Guillermo L. ;

Doallo, Ramon ;

Posada, David .

BIOINFORMATICS, 2011, 27 (08) :1164-1165

[6] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[7] Complete DNA sequence of the mitochondrial genome of the sea-slug, Aplysia californica:: Conservation of the gene order in Euthyneura [J].

Knudsen, B ;

Kohn, AB ;

Nahir, B ;

McFadden, CS ;

Moroz, LL .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2006, 38 (02) :459-469

[8] Morphological and mitochondrial-DNA analysis of the Indo-West Pacific rock oysters (Ostreidae: Saccostrea species) [J].

Lam, Katherine ;

Morton, Brian .

JOURNAL OF MOLLUSCAN STUDIES, 2006, 72 :235-245

[9] Complete sequence and gene organization of the mitochondrial genome for Hubbard's sportive lemur (Lepilemur hubbardorum) [J].

Lei, Runhua ;

Shore, Gary D. ;

Brenneman, Rick A. ;

Engberg, Shannon E. ;

Sitzmann, Brandon D. ;

Bailey, Carolyn A. ;

Kimmel, Lisa M. ;

Randriamampionona, Richard ;

Ranaivoarisoa, Jean Freddy ;

Louis, Edward E., Jr. .

GENE, 2010, 464 (1-2) :44-49

[10] The complete mitochondrial genome of the tropical oyster Saccostrea echinata (Bivalvia: Ostreidae) from the South China Sea [J].

Li, Yafang ;

Xu, Lei ;

Wang, Xuehui ;

Huang, Delian ;

Wang, Lianggen ;

Ning, Jiajia ;

Liu, Shuangshuang ;

Du, Feiyan .

MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (02) :384-386

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