Quantitative proteomics identifies redox switches for global translation modulation by mitochondrially produced reactive oxygen species

被引:172
作者
Topf, Ulrike [1 ,2 ]
Suppanz, Ida [3 ,4 ]
Samluk, Lukasz [1 ,2 ]
Wrobel, Lidia [1 ]
Boeser, Alexander [3 ]
Sakowska, Paulina [1 ]
Knapp, Bettina [3 ]
Pietrzyk, Martyna K. [1 ,2 ]
Chacinska, Agnieszka [1 ,2 ]
Warscheid, Bettina [3 ,4 ,5 ]
机构
[1] Int Inst Mol & Cell Biol, 4 Ks Trojdena St, PL-02109 Warsaw, Poland
[2] Univ Warsaw, Ctr New Technol, S Banacha 2c, PL-02097 Warsaw, Poland
[3] Univ Freiburg, Fac Biol, Inst Biol 2, Biochem Funct Prote, Schanzlestr 1, D-79104 Freiburg, Germany
[4] Univ Freiburg, BIOSS Ctr Biol Signalling Studies, Schanzlestr 18, D-79104 Freiburg, Germany
[5] Univ Freiburg, ZBSA Ctr Biol Syst Anal, Habsburgerstr 49, D-79104 Freiburg, Germany
基金
欧洲研究理事会; 瑞士国家科学基金会;
关键词
OXIDATIVE STRESS; YEAST; MECHANISMS; PROTEINS; CYSTEINE; IMPORT; INITIATION; TRANSCRIPTION; PROTEOSTASIS; LANDSCAPE;
D O I
10.1038/s41467-017-02694-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The generation of reactive oxygen species (ROS) is inevitably linked to life. However, the precise role of ROS in signalling and specific targets is largely unknown. We perform a global proteomic analysis to delineate the yeast redoxome to a depth of more than 4,300 unique cysteine residues in over 2,200 proteins. Mapping of redox-active thiols in proteins exposed to exogenous or endogenous mitochondria-derived oxidative stress reveals ROS-sensitive sites in several components of the translation apparatus. Mitochondria are the major source of cellular ROS. We demonstrate that increased levels of intracellular ROS caused by dysfunctional mitochondria serve as a signal to attenuate global protein synthesis. Hence, we propose a universal mechanism that controls protein synthesis by inducing reversible changes in the translation machinery upon modulating the redox status of proteins involved in translation. This crosstalk between mitochondria and protein synthesis may have an important contribution to pathologies caused by dysfunctional mitochondria.
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页数:17
相关论文
共 69 条
[1]   Structure of the Yeast Mitochondrial Large Ribosomal Subunit [J].
Amunts, Alexey ;
Brown, Alan ;
Bai, Xiao-chen ;
Llacer, Jose L. ;
Hussain, Tanweer ;
Emsley, Paul ;
Long, Fei ;
Murshudov, Garib ;
Scheres, Sjors H. W. ;
Ramakrishnan, V. .
SCIENCE, 2014, 343 (6178) :1485-1489
[2]   Proteolytic clipping of histone tails: the emerging role of histone proteases in regulation of various biological processes [J].
Azad, Gajendra Kumar ;
Tomar, Raghuvir S. .
MOLECULAR BIOLOGY REPORTS, 2014, 41 (05) :2717-2730
[3]  
Baker BM., 2010, PLOS GENET, V8
[4]   Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration [J].
Bauer, Sebastian ;
Grossmann, Steffen ;
Vingron, Martin ;
Robinson, Peter N. .
BIOINFORMATICS, 2008, 24 (14) :1650-1651
[5]   Intracellular signaling by the unfolded protein response [J].
Bernales, Sebastian ;
Papa, Feroz R. ;
Walter, Peter .
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, 2006, 22 :487-508
[6]   Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics [J].
Boersema, Paul J. ;
Raijmakers, Reinout ;
Lemeer, Simone ;
Mohammed, Shabaz ;
Heck, Albert J. R. .
NATURE PROTOCOLS, 2009, 4 (04) :484-494
[7]   Presequence-dependent folding ensures MrpL32 processing by the m-AAA protease in mitochondria [J].
Bonn, Florian ;
Tatsuta, Takashi ;
Petrungaro, Carmelina ;
Riemer, Jan ;
Langer, Thomas .
EMBO JOURNAL, 2011, 30 (13) :2545-2556
[8]   Using Quantitative Redox Proteomics to Dissect the Yeast Redoxome [J].
Brandes, Nicolas ;
Reichmann, Dana ;
Tienson, Heather ;
Leichert, Lars I. ;
Jakob, Ursula .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2011, 286 (48) :41893-41903
[9]   Essential role of Mia40 in import and assembly of mitochondrial intermembrane space proteins [J].
Chacinska, A ;
Pfannschmidt, S ;
Wiedemann, N ;
Kozjak, V ;
Szklarz, LKS ;
Schulze-Specking, A ;
Truscott, KN ;
Guiard, B ;
Meisinger, C ;
Pfanner, N .
EMBO JOURNAL, 2004, 23 (19) :3735-3746
[10]  
Clemens MJ, 2001, PROG MOLEC, V27, P57