Characterization of the complete chloroplast genome of Hedysarum polybotrys var. alaschanicum (Fabaceae) and its phylogeny

被引：3
作者：
Cao, Jia-Ning [1 ]
Han, Chun-Rong [2 ]
Yang, Yan-Ci [1 ]
机构：
[1] Baotou Teachers Coll, Sch Biol Sci & Technol, Baotou 014030, Inner Mongolia, Peoples R China
[2] Inner Mongolia Wuhai Wetland Adm, Wuhai, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 11期
关键词：
Hedysarum polybotrys var; alaschanicum; Chloroplast genome; phylogenetic analysis;
D O I：
10.1080/23802359.2021.1994900
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Hedysarum polybotrys var. alaschanicum is an important medicinal plant and is widely used in traditional Chinese medicine. The complete chloroplast genome of H. polybotrys var. alaschanicum was assembled from Illumina pair-end sequence reads. The whole chloroplast genome is 122,933 bp in length and encodes a total of 110 genes, including 76 protein-coding genes, 30 tRNA genes and 4 rRNA genes. The overall GC content of the cp genome is 35.3%. A maximum likelihood (ML) phylogenetic analysis revealed that H. polybotrys var. alaschanicum was close to Hedysarum semenovii.
引用
收藏
页码：3312 / 3313
页数：2
相关论文
共 11 条
[1]   Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs [J].
Chevreux, B ;
Pfisterer, T ;
Drescher, B ;
Driesel, AJ ;
Müller, WEG ;
Wetter, T ;
Suhai, S .
GENOME RESEARCH, 2004, 14 (06) :1147-1159
[2]  
Choi Byoung-Hee, 1998, Taxon, V47, P877, DOI 10.2307/1224197
[3]   Phytochemicals and biological studies of plants in genus Hedysarum [J].
Dong, Yinmao ;
Tang, Dongyan ;
Zhang, Na ;
Li, Yue ;
Zhang, Chunhong ;
Li, Li ;
Li, Minhui .
CHEMISTRY CENTRAL JOURNAL, 2013, 7
[4]   THE RETENTION INDEX AND HOMOPLASY EXCESS [J].
FARRIS, JS .
SYSTEMATIC ZOOLOGY, 1989, 38 (04) :406-407
[5]   Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].
Hahn, Christoph ;
Bachmann, Lutz ;
Chevreux, Bastien .
NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129
[6]   Antidiabetic properties of purified polysaccharide from Hedysarum polybotrys [J].
Hu, Fangdi ;
Li, Xiaodong ;
Zhao, Lianggong ;
Feng, Shilan ;
Wang, Chunming .
CANADIAN JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY, 2010, 88 (01) :64-72
[7]   MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].
Katoh, Kazutaka ;
Standley, Daron M. .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780
[8]   Hedysarum L. ( Fabaceae: Hedysareae) Is Not Monophyletic - Evidence from Phylogenetic Analyses Based on Five Nuclear and Five Plastid Sequences [J].
Liu, Pei-Liang ;
Wen, Jun ;
Duan, Lei ;
Arslan, Emine ;
Ertugrul, Kuddisi ;
Chang, Zhao-Yang .
PLOS ONE, 2017, 12 (01)
[9]   Molecular phylogeny and divergence times of the genus Hedysarum (Fabaceae) with special reference to section Multicaulia in Southwest Asia [J].
Nafisi, Haniyeh ;
Kazempour-Osaloo, Shahrokh ;
Mozaffarian, Valiollah ;
Schneeweiss, Gerald M. .
PLANT SYSTEMATICS AND EVOLUTION, 2019, 305 (10) :1001-1017
[10]   RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies [J].
Stamatakis, Alexandros .
BIOINFORMATICS, 2014, 30 (09) :1312-1313
12