In-cell NMR: Why and how?

被引:35
|
作者
Theillet, Francois-Xavier [1 ]
Luchinat, Enrico [2 ,3 ,4 ]
机构
[1] Univ Paris Saclay, Inst Integrat Biol Cell I2BC, CEA, CNRS, F-91198 Gif Sur Yvette, France
[2] Alma Mater Studiorum Univ Bologna, Dipartimento Sci & Tecnol Agroalimentari, Piazza Goidanich 60, I-47521 Cesena, Italy
[3] Univ Firenze, CERM Magnet Resonance Ctr, I-50019 Sesto Fiorentino, Italy
[4] Univ Firenze, Neurofarba Dept, I-50019 Sesto Fiorentino, Italy
关键词
Structural biology; Biophysics; Metabolomics; Drug research; Cellular environment; NUCLEAR-MAGNETIC-RESONANCE; SOLID-STATE NMR; ANGLE-SPINNING NMR; BREAST-CANCER-CELLS; HR-MAS NMR; RED-BLOOD-CELL; ESCHERICHIA-COLI MEMBRANES; TRANSFER DIFFERENCE NMR; AQUEOUS SHIFT-REAGENTS; FILTERED NA-23 NMR;
D O I
10.1016/j.pnmrs.2022.04.002
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
NMR spectroscopy has been applied to cells and tissues analysis since its beginnings, as early as 1950. We have attempted to gather here in a didactic fashion the broad diversity of data and ideas that emerged from NMR investigations on living cells. Covering a large proportion of the periodic table, NMR spectroscopy permits scrutiny of a great variety of atomic nuclei in all living organisms non-invasively. It has thus provided quantitative information on cellular atoms and their chemical environment, dynamics, or interactions. We will show that NMR studies have generated valuable knowledge on a vast array of cellular molecules and events, from water, salts, metabolites, cell walls, proteins, nucleic acids, drugs and drug targets, to pH, redox equilibria and chemical reactions. The characterization of such a multitude of objects at the atomic scale has thus shaped our mental representation of cellular life at multiple levels, together with major techniques like mass-spectrometry or microscopies. NMR studies on cells has accompanied the developments of MRI and metabolomics, and various sub fields have flourished, coined with appealing names: fluxomics, foodomics, MRI and MRS (i.e. imaging and localized spectroscopy of living tissues, respectively), whole-cell NMR, on-cell ligand-based NMR, systems NMR, cellular structural biology, in-cell NMR. .. All these have not grown separately, but rather by reinforcing each other like a braided trunk. Hence, we try here to provide an analytical account of a large ensemble of intricately linked approaches, whose integration has been and will be key to their success. We present extensive overviews, firstly on the various types of information provided by NMR in a cellular environment (the "why", oriented towards a broad readership), and secondly on the employed NMR techniques and setups (the "how", where we discuss the past, current and future methods). Each subsection is constructed as a historical anthology, showing how the intrinsic properties of NMR spectroscopy and its developments structured the accessible knowledge on cellular phenomena. Using this systematic approach, we sought i) to make this review accessible to the broadest audience and ii) to highlight some early techniques that may find renewed interest. Finally, we present a brief discussion on what may be potential and desirable developments in the context of integrative studies in biology. (c) 2022 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY license (http:// creativecommons.org/licenses/by/4.0/).
引用
收藏
页码:1 / 112
页数:112
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