Charge neutralization of lysine via carbamylation reveals hidden aggregation hot-spots in tau protein flanking regions

被引:9
作者
Gadhavi, Joshna [1 ]
Shah, Sumedha [1 ]
Sinha, Tulika [2 ]
Jain, Alok [2 ]
Gupta, Sharad [1 ]
机构
[1] Indian Inst Technol Gandhinagar, Dept Biol Engn, Palaj 382355, Gandhinagar, India
[2] Birla Inst Technol, Dept Bioengn & Biotechnol, Ranchi 835215, Bihar, India
关键词
carbamylation; charge neutralization; flanking region; MD simulation; tau aggregation; CRYO-EM STRUCTURES; BINDING; SIMULATIONS;
D O I
10.1111/febs.16284
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Tau protein is found abundantly in neurofibrillary tangles in Alzheimer's disease (AD). The longest human tau isoform (2N4R) has 44 lysine residues. Several lysine-based post-translational modifications (PTMs) such as glycation, acetylation, ubiquitination, and sumoylation have been implicated not only in AD, but also in other tauopathies. Carbamylation is one such lysine neutralizing age-related nonenzymatic PTM which can modulate the aggregation propensity of tau. In this work, we have studied the aggregation potential of lysine-rich regions of tau upon carbamylation which do not aggregate in their native form. Using an array of biophysical and microscopic analyses, such as ThT kinetic assay, fluorescence microscopy, Congo red staining, and scanning electron microscopy, we demonstrate that peptides derived from four of five such regions exhibit robust fibrillar amyloid formation. These regions are found in the N-terminal projection domain that encompasses proline-rich domain (148-153 and 223-230), repeat domain R1 (253-260), as well as fibrillary core region (368-378), and can be described as hidden aggregation hot-spots which become activated upon carbamylation. We have further compared the impact of carbamylation with acetylation on the aggregation propensity of lysine-rich peptide ((254)KKVAVV(259)) using biophysical experiments and molecular dynamics simulations and deduced that carbamylation is a much stronger driver of aggregation than acetylation. Our findings may offer more insight into amyloid fibrils' interaction with hidden aggregation-prone nucleating sequences that act as hot-spots for inducing tau fibrillation.
引用
收藏
页码:2562 / 2577
页数:16
相关论文
共 42 条
[1]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[2]  
[Anonymous], PYMOL MOL GRAPHICS S
[3]   Folding of the repeat domain of tau upon binding to lipid surfaces [J].
Barre, Patrick ;
Eliezer, David .
JOURNAL OF MOLECULAR BIOLOGY, 2006, 362 (02) :312-326
[4]   Canonical sampling through velocity rescaling [J].
Bussi, Giovanni ;
Donadio, Davide ;
Parrinello, Michele .
JOURNAL OF CHEMICAL PHYSICS, 2007, 126 (01)
[5]   PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092
[6]   Major Differences between the Self-Assembly and Seeding Behavior of Heparin-Induced and in Vitro Phosphorylated Tau and Their Modulation by Potential Inhibitors [J].
Despres, Clement ;
Di, Jing ;
Cantrelle, Francois-Xavier ;
Li, Zizheng ;
Huvent, Isabelle ;
Chambraud, Beatrice ;
Zhao, Jing ;
Chen, Jianle ;
Chen, Shiguo ;
Lippens, Guy ;
Zhang, Fuming ;
Linhardt, Robert ;
Wang, Chunyu ;
Klaerner, Frank-Gerrit ;
Schrader, Thomas ;
Landrieu, Isabelle ;
Bitan, Gal ;
Smet-Nocca, Caroline .
ACS CHEMICAL BIOLOGY, 2019, 14 (06) :1363-1379
[7]   Membrane-mediated fibrillation and toxicity of the tau hexapeptide PHF6 [J].
Fanni, Adeline M. ;
Vander Zanden, Crystal M. ;
Majewska, Paulina, V ;
Majewski, Jaroslaw ;
Chi, Eva Y. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2019, 294 (42) :15304-15317
[8]   Acetylation Disfavors Tau Phase Separation [J].
Ferreon, Josephine C. ;
Jain, Antrix ;
Choi, Kyoung-Jae ;
Tsoi, Phoebe S. ;
MacKenzie, Kevin R. ;
Jung, Sung Yun ;
Ferreon, Allan Chris .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 19 (05)
[9]   Conformational Changes Specific for Pseudophosphorylation at Serine 262 Selectively Impair Binding of Tau to Microtubules [J].
Fischer, Daniela ;
Mukrasch, Marco D. ;
Biernat, Jacek ;
Bibow, Stefan ;
Blackledge, Martin ;
Griesinger, Christian ;
Mandelkow, Eckhard ;
Zweckstetter, Markus .
BIOCHEMISTRY, 2009, 48 (42) :10047-10055
[10]   Cryo-EM structures of tau filaments from Alzheimer's disease [J].
Fitzpatrick, Anthony W. P. ;
Falcon, Benjamin ;
He, Shaoda ;
Murzin, Alexey G. ;
Murshudov, Garib ;
Garringer, Holly J. ;
Crowther, R. Anthony ;
Ghetti, Bernardino ;
Goedert, Michel ;
Scheres, Sjors H. W. .
NATURE, 2017, 547 (7662) :185-+