Prognostic Biomarkers on a Competitive Endogenous RNA Network Reveals Overall Survival in Triple-Negative Breast Cancer

被引:5
作者
Qin, Wenxing [1 ]
Qi, Feng [1 ,2 ]
Li, Jia [2 ]
Li, Ping [3 ]
Zang, Yuan-Sheng [1 ]
机构
[1] Naval Med Univ, Changzheng Hosp, Dept Oncol, Shanghai, Peoples R China
[2] Fudan Univ, Zhongshan Hosp, Liver Canc Inst, Shanghai, Peoples R China
[3] Naval Med Univ, Changhai Hosp, Dept Gastroenterol, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
competitive endogenous RNA; triple-negative breast cancer; prognostic model; differentially expressed genes; nomogram; MATRIX METALLOPROTEINASES; TISSUE INHIBITORS; CERNA CROSSTALK; GENE-EXPRESSION; RESISTANCE; EVOLUTION; MELANOMA; DISEASE; GROWTH; TUMORS;
D O I
10.3389/fonc.2021.681946
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
The objective of this study was to construct a competitive endogenous RNA (ceRNA) regulatory network using differentially expressed long noncoding RNAs (lncRNAs), microRNAs (miRNAs), and mRNAs in patients with triple-negative breast cancer (TNBC) and to construct a prognostic model for predicting overall survival (OS) in patients with TNBC. Differentially expressed lncRNAs, miRNAs, and mRNAs in TNBC patients from the TCGA and Metabric databases were examined. A prognostic model based on prognostic scores (PSs) was established for predicting OS in TNBC patients, and the performance of the model was assessed by a recipient that operated on a distinctive curve. A total of 874 differentially expressed RNAs (DERs) were screened, among which 6 lncRNAs, 295 miRNAs and 573 mRNAs were utilized to construct targeted and coexpression ceRNA regulatory networks. Eight differentially expressed genes (DEGs) associated with survival prognosis, DBX2, MYH7, TARDBP, POU4F1, ABCB11, LHFPL5, TRHDE and TIMP4, were identified by multivariate Cox regression and then used to establish a prognostic model. Our study shows that the ceRNA network has a critical role in maintaining the aggressiveness of TNBC and provides comprehensive molecular-level insight for predicting individual mortality hazards for TNBC patients. Our data suggest that these prognostic mRNAs from the ceRNA network are promising therapeutic targets for clinical intervention.
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页数:14
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[1]  
Abbas Anzar, 2021, Digit Biomark, V5, P29, DOI 10.1159/000512383
[2]   Molecular Profiling of the Residual Disease of Triple-Negative Breast Cancers after Neoadjuvant Chemotherapy Identifies Actionable Therapeutic Targets [J].
Balko, Justin M. ;
Giltnane, Jennifer M. ;
Wang, Kai ;
Schwarz, Luis J. ;
Young, Christian D. ;
Cook, Rebecca S. ;
Owens, Phillip ;
Sanders, Melinda E. ;
Kuba, Maria G. ;
Sanchez, Violeta ;
Kurupi, Richard ;
Moore, Preston D. ;
Pinto, Joseph A. ;
Doimi, Franco D. ;
Gomez, Henry ;
Horiuchi, Dai ;
Goga, Andrei ;
Lehmann, Brian D. ;
Bauer, Joshua A. ;
Pietenpol, Jennifer A. ;
Ross, Jeffrey S. ;
Palmer, Gary A. ;
Yelensky, Roman ;
Cronin, Maureen ;
Miller, Vincent A. ;
Stephens, Phillip J. ;
Arteaga, Carlos L. .
CANCER DISCOVERY, 2014, 4 (02) :232-245
[3]   Our genome unveiled [J].
Baltimore, D .
NATURE, 2001, 409 (6822) :814-816
[4]   Exploring specific prognostic biomarkers in triple-negative breast cancer [J].
Bao, Chang ;
Lu, Yunkun ;
Chen, Jishun ;
Chen, Danni ;
Lou, Weiyang ;
Ding, Bisha ;
Xu, Liang ;
Fan, Weimin .
CELL DEATH & DISEASE, 2019, 10 (11)
[5]   The tissue inhibitors of metalloproteinases (TIMPs): An ancient family with structural and functional diversity [J].
Brew, Keith ;
Nagase, Hideaki .
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH, 2010, 1803 (01) :55-71
[6]   Multiple roles of TDP-43 in gene expression, splicing regulation, and human disease [J].
Buratti, Emanuele ;
Baralle, Francisco E. .
FRONTIERS IN BIOSCIENCE-LANDMARK, 2008, 13 :867-878
[7]   Computational Tools for Evaluating Phylogenetic and Hierarchical Clustering Trees [J].
Chakerian, John ;
Holmes, Susan .
JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS, 2012, 21 (03) :581-599
[8]   circEPSTI1 as a Prognostic Marker and Mediator of Triple-Negative Breast Cancer Progression [J].
Chen, Bo ;
Wei, Weidong ;
Huang, Xiaojia ;
Xie, Xinhua ;
Kong, Yanan ;
Dai, Danian ;
Yang, Lu ;
Wang, Jin ;
Tang, Hailin ;
Xie, Xiaoming .
THERANOSTICS, 2018, 8 (14) :4003-4015
[9]   The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups [J].
Curtis, Christina ;
Shah, Sohrab P. ;
Chin, Suet-Feung ;
Turashvili, Gulisa ;
Rueda, Oscar M. ;
Dunning, Mark J. ;
Speed, Doug ;
Lynch, Andy G. ;
Samarajiwa, Shamith ;
Yuan, Yinyin ;
Graef, Stefan ;
Ha, Gavin ;
Haffari, Gholamreza ;
Bashashati, Ali ;
Russell, Roslin ;
McKinney, Steven ;
Langerod, Anita ;
Green, Andrew ;
Provenzano, Elena ;
Wishart, Gordon ;
Pinder, Sarah ;
Watson, Peter ;
Markowetz, Florian ;
Murphy, Leigh ;
Ellis, Ian ;
Purushotham, Arnie ;
Borresen-Dale, Anne-Lise ;
Brenton, James D. ;
Tavare, Simon ;
Caldas, Carlos ;
Aparicio, Samuel .
NATURE, 2012, 486 (7403) :346-352
[10]   Global, Regional, and National Cancer Incidence, Mortality, Years of Life Lost, Years Lived With Disability, and Disability-Adjusted Life-Years for 29 Cancer Groups, 1990 to 2017 A Systematic Analysis for the Global Burden of Disease Study [J].
Fitzmaurice, Christina ;
Abate, Degu ;
Abbasi, Naghmeh ;
Abbastabar, Hedayat ;
Abd-Allah, Foad ;
Abdel-Rahman, Omar ;
Abdelalim, Ahmed ;
Abdoli, Amir ;
Abdollahpour, Ibrahim ;
Abdulle, Abdishakur S. M. ;
Abebe, Nebiyu Dereje ;
Abraha, Haftom Niguse ;
Abu-Raddad, Laith Jamal ;
Abualhasan, Ahmed ;
Adedeji, Isaac Akinkunmi ;
Advani, Shailesh M. ;
Afarideh, Mohsen ;
Afshari, Mandi ;
Aghaali, Mohammad ;
Agius, Dominic ;
Agrawal, Sutapa ;
Ahmadi, Ayat ;
Ahmadian, Elham ;
Ahmadpour, Ehsan ;
Ahmed, Muktar Beshir ;
Akbari, Mohammad Esmaeil ;
Akinyemiju, Tomi ;
Al-Aly, Ziyad ;
AlAbdulKader, Assim M. ;
Alandab, Fares ;
Alam, Tahiya ;
Alamene, Genet Melak ;
Alemnew, Birhan Tamene T. ;
Alene, Kefyalew Addis ;
Alinia, Cyrus ;
Alipour, Vahid ;
Aljunid, Syed Mohamed ;
Bakeshei, Fatemeh Allah ;
Abdulrahman, Majid ;
Almadi, Hamad ;
Almasi-Hashiani, Amir ;
Alsharif, Ubai ;
Alsowaidi, Shirina ;
Alvis-Guzman, Nelson ;
Amini, Erfan ;
Amini, Saeed ;
Amoako, Yaw Ampem ;
Anbari, Zohreh ;
Anber, Nahla Hamed ;
Andrei, Catalina Liliana .
JAMA ONCOLOGY, 2019, 5 (12) :1749-1768