Evolution by gene loss

被引:493
作者
Albalat, Ricard [1 ]
Canestro, Cristian
机构
[1] Univ Barcelona, Dept Genet Microbiol & Estadist, Av Diagonal 643, E-08028 Barcelona, Spain
关键词
WHOLE-GENOME DUPLICATION; OF-FUNCTION VARIANTS; SEQUENCE DIVERGENCE; DNA-METHYLATION; Y-CHROMOSOMES; REVEALS; YEAST; ROBUSTNESS; EXPRESSION; CHORDATE;
D O I
10.1038/nrg.2016.39
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The recent increase in genomic data is revealing an unexpected perspective of gene loss as a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This novel perspective of gene loss is raising new fundamental questions. How relevant has gene loss been in the divergence of phyla? How do genes change from being essential to dispensable and finally to being lost? Is gene loss mostly neutral, or can it be an effective way of adaptation? These questions are addressed, and insights are discussed from genomic studies of gene loss in populations and their relevance in evolutionary biology and biomedicine.
引用
收藏
页码:379 / 391
页数:13
相关论文
共 216 条
[1]   From essential to persistent genes: a functional approach to constructing synthetic life [J].
Acevedo-Rocha, Carlos G. ;
Fang, Gang ;
Schmidt, Markus ;
Ussery, David W. ;
Danchin, Antoine .
TRENDS IN GENETICS, 2013, 29 (05) :273-279
[2]   DNA methylation in amphioxus: from ancestral functions to new roles in vertebrates [J].
Albalat, Ricard ;
Marti-Solans, Josep ;
Canestro, Cristian .
BRIEFINGS IN FUNCTIONAL GENOMICS, 2012, 11 (02) :142-155
[4]   Evolutionary mutant models for human disease [J].
Albertson, R. Craig ;
Cresko, William ;
Detrich, H. William, III ;
Postlethwait, John H. .
TRENDS IN GENETICS, 2009, 25 (02) :74-81
[5]   Reductive evolution of resident genomes [J].
Andersson, SGE ;
Kurland, CG .
TRENDS IN MICROBIOLOGY, 1998, 6 (07) :263-268
[6]   Lineage-specific loss and divergence of functionally linked genes in eukaryotes [J].
Aravind, L ;
Watanabe, H ;
Lipman, DJ ;
Koonin, EV .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (21) :11319-11324
[7]   Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants:: the Keio collection [J].
Baba, Tomoya ;
Ara, Takeshi ;
Hasegawa, Miki ;
Takai, Yuki ;
Okumura, Yoshiko ;
Baba, Miki ;
Datsenko, Kirill A. ;
Tomita, Masaru ;
Wanner, Barry L. ;
Mori, Hirotada .
MOLECULAR SYSTEMS BIOLOGY, 2006, 2 (1) :2006.0008
[8]  
Baryshnikova A, 2010, NAT METHODS, V7, P1017, DOI [10.1038/nmeth.1534, 10.1038/NMETH.1534]
[9]   Lack of resolution in the animal phylogeny: Closely spaced cladogeneses or undetected systematic errors? [J].
Baurain, Denis ;
Brinkmann, Henner ;
Philippe, Herve .
MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (01) :6-9
[10]   Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators [J].
Bellott, Daniel W. ;
Hughes, Jennifer F. ;
Skaletsky, Helen ;
Brown, Laura G. ;
Pyntikova, Tatyana ;
Cho, Ting-Jan ;
Koutseva, Natalia ;
Zaghlul, Sara ;
Graves, Tina ;
Rock, Susie ;
Kremitzki, Colin ;
Fulton, Robert S. ;
Dugan, Shannon ;
Ding, Yan ;
Morton, Donna ;
Khan, Ziad ;
Lewis, Lora ;
Buhay, Christian ;
Wang, Qiaoyan ;
Watt, Jennifer ;
Holder, Michael ;
Lee, Sandy ;
Nazareth, Lynne ;
Rozen, Steve ;
Muzny, Donna M. ;
Warren, Wesley C. ;
Gibbs, Richard A. ;
Wilson, Richard K. ;
Page, David C. .
NATURE, 2014, 508 (7497) :494-+