miRNA Biogenesis: A Dynamic Pathway

被引:235
作者
Achkar, Natalia P. [1 ]
Cambiagno, Damian A. [1 ]
Manavella, Pablo A. [1 ]
机构
[1] Univ Nacl Litoral, FBCB, CONICET, Inst Agrobiotecnol Litoral, RA-3000 Santa Fe, Argentina
关键词
DSRNA-BINDING PROTEINS; MICRORNA BIOGENESIS; PRI-MIRNA; SIRNA BIOGENESIS; RNA RECOGNITION; IN-VIVO; ARABIDOPSIS; PLANT; TRANSCRIPTION; COMPLEX;
D O I
10.1016/j.tplants.2016.09.003
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
MicroRNAs (miRNAs) modulate plant homeostasis through the inactivation of specific mRNAs, especially those encoding transcription factors. A delicate spatial/temporal balance between a miRNA and its targets is central to achieving the appropriate biological outcomes. In this review we discuss our growing understanding of the dynamic regulation of miRNA biogenesis. We put special emphasis on crosstalk between miRNA biogenesis and other cellular processes such as transcription and splicing. We also discuss how the pathway is regulated in specific tissues to achieve harmonious plant development through a subtle balance between gene expression and silencing.
引用
收藏
页码:1034 / 1044
页数:11
相关论文
共 85 条
[1]   Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome [J].
Addo-Quaye, Charles ;
Snyder, Jo Ann ;
Park, Yong Bum ;
Li, Yong-Fang ;
Sunkar, Ramanjulu ;
Axtell, Michael J. .
RNA, 2009, 15 (12) :2112-2121
[2]   Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins [J].
Baranauske, Simona ;
Mickute, Milda ;
Plotnikova, Alexandra ;
Finke, Andreas ;
Venclovas, Ceslovas ;
Klimasauskas, Saulius ;
Vilkaitis, Giedrius .
NUCLEIC ACIDS RESEARCH, 2015, 43 (05) :2802-2812
[3]   Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses [J].
Ben Amor, Besma ;
Wirth, Sonia ;
Merchan, Francisco ;
Laporte, Philippe ;
d'Aubenton-Carafa, Yves ;
Hirsch, Judith ;
Maizel, Alexis ;
Mallory, Allison ;
Lucas, Antoine ;
Deragon, Jean Marc ;
Vaucheret, Herve ;
Thermes, Claude ;
Crespi, Martin .
GENOME RESEARCH, 2009, 19 (01) :57-69
[4]   STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis [J].
Ben Chaabane, Samir ;
Liu, Renyi ;
Chinnusamy, Viswanathan ;
Kwon, Yerim ;
Park, Joo-hyuk ;
Kim, Seo Yeon ;
Zhu, Jian-Kang ;
Yang, Seong Wook ;
Lee, Byeong-ha .
NUCLEIC ACIDS RESEARCH, 2013, 41 (03) :1984-1997
[5]   Introns of plant pri-miRNAs enhance miRNA biogenesis [J].
Bielewicz, Dawid ;
Kalak, Malgorzata ;
Kalyna, Maria ;
Windels, David ;
Barta, Andrea ;
Vazquez, Franck ;
Szweykowska-Kulinska, Zofia ;
Jarmolowski, Artur .
EMBO REPORTS, 2013, 14 (07) :622-628
[6]   The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs in Arabidopsis [J].
Bologna, Nicolas G. ;
Voinnet, Olivier .
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65, 2014, 65 :473-503
[7]   Multiple RNA recognition patterns during microRNA biogenesis in plants [J].
Bologna, Nicolas G. ;
Schapire, Arnaldo L. ;
Zhai, Jixian ;
Chorostecki, Uciel ;
Boisbouvier, Jerome ;
Meyers, Blake C. ;
Palatnik, Javier F. .
GENOME RESEARCH, 2013, 23 (10) :1675-1689
[8]   A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159 [J].
Bologna, Nicolas G. ;
Mateos, Julieta L. ;
Bresso, Edgardo G. ;
Palatnik, Javier F. .
EMBO JOURNAL, 2009, 28 (23) :3646-3656
[9]   The evolutionarily conserved TOUGH protein is required for proper development of Arabidopsis thaliana [J].
Calderon-Villalobos, LIA ;
Kuhnle, C ;
Dohmann, EMN ;
Li, HB ;
Bevan, M ;
Schwechheimer, C .
PLANT CELL, 2005, 17 (09) :2473-2485
[10]   22-nucleotide RNAs trigger secondary siRNA biogenesis in plants [J].
Chen, Ho-Ming ;
Chen, Li-Teh ;
Patel, Kanu ;
Li, Yi-Hang ;
Baulcombe, David C. ;
Wu, Shu-Hsing .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (34) :15269-15274