Molecular basis for chromatin assembly and modification by multiprotein complexes

被引:13
|
作者
Ricketts, M. Daniel [1 ,2 ]
Han, Joseph [3 ]
Szurgot, Mary R. [4 ]
Marmorstein, Ronen [1 ,2 ,3 ,4 ]
机构
[1] Univ Penn, Perelman Sch Med, Dept Biochem & Biophys, Philadelphia, PA 19104 USA
[2] Univ Penn, Abramson Family Canc Res Inst, Philadelphia, PA USA
[3] Univ Penn, Dept Chem, Grad Grp, Philadelphia, PA 19104 USA
[4] Univ Penn, Perelman Sch Med, Grad Grp Biochem & Mol Biophys, Philadelphia, PA 19104 USA
关键词
Histone chaperones; chromatin regulation; chromatin remodeling; epigenetic mechanisms; histones; histone modification complexes; CENTROMERIC NUCLEOSOME RECOGNITION; HISTONE CHAPERONE; STRUCTURAL BASIS; CATALYTIC SUBUNIT; CRYSTAL-STRUCTURE; POLYCOMB PROTEIN; PRC2; ACETYLTRANSFERASE; HBO1; REMODELER;
D O I
10.1002/pro.3535
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Epigenetic regulation of the chromatin landscape is often orchestrated through modulation of nucleosomes. Nucleosomes are composed of two copies each of the four core histones, H2A, H2B, H3, and H4, wrapped in similar to 150 bp of DNA. We focus this review on recent structural studies that further elucidate the mechanisms used by macromolecular complexes to mediate histone modification and nucleosome assembly. Nucleosome assembly, spacing, and variant histone incorporation are coordinated by chromatin remodeler and histone chaperone complexes. Several recent structural studies highlight how disparate families of histone chaperones and chromatin remodelers share similar features that underlie how they interact with their respective histone or nucleosome substrates. Post-translational modification of histone residues is mediated by enzymatic subunits within large complexes. Until recently, relatively little was known about how association with auxiliary subunits serves to modulate the activity and specificity of the enzymatic subunit. Analysis of several recent structures highlights the different modes that auxiliary subunits use to influence enzymatic activity or direct specificity toward individual histone residues.
引用
收藏
页码:329 / 343
页数:15
相关论文
共 50 条
  • [1] Characterizing the molecular architectures of chromatin-modifying complexes
    Setiaputra, Dheva T.
    Yip, Calvin K.
    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2017, 1865 (11): : 1613 - 1622
  • [2] Combinatorial assembly and function of chromatin regulatory complexes
    Lange, Martin
    Demajo, Santiago
    Jain, Payal
    Di Croce, Luciano
    EPIGENOMICS, 2011, 3 (05) : 567 - 580
  • [3] Molecular basis of cobalamin-dependent RNA modification
    Dowling, Daniel P.
    Miles, Zachary D.
    Kohrer, Caroline
    Maiocco, Stephanie J.
    Elliott, Sean J.
    Bandarian, Vahe
    Drennan, Catherine L.
    NUCLEIC ACIDS RESEARCH, 2016, 44 (20) : 9965 - 9976
  • [4] Molecular Architecture of Yeast Chromatin Assembly Factor 1
    Kim, Daegeun
    Setiaputra, Dheva
    Jung, Taeyang
    Chung, Jaehee
    Leitner, Alexander
    Yoon, Jungmin
    Aebersold, Ruedi
    Hebert, Hans
    Yip, Calvin K.
    Song, Ji-Joon
    SCIENTIFIC REPORTS, 2016, 6
  • [5] Chromatin Assembly of Histone Variants
    Zhou Ju-Jun
    Feng Xiao-Li
    Zhou Zheng
    PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2015, 42 (11) : 1003 - 1008
  • [6] Integrating Ion Mobility Mass Spectrometry with Molecular Modelling to Determine the Architecture of Multiprotein Complexes
    Politis, Argyris
    Park, Ah Young
    Hyung, Suk-Joon
    Barsky, Daniel
    Ruotolo, Brandon T.
    Robinson, Carol V.
    PLOS ONE, 2010, 5 (08):
  • [7] The molecular basis of chromatin dynamics during nucleotide excision repair
    Zhang, Ling
    Jones, Kristi
    Gong, Feng
    BIOCHEMISTRY AND CELL BIOLOGY, 2009, 87 (01) : 265 - 272
  • [8] Histone variants and chromatin assembly in plant abiotic stress responses
    Zhu, Yan
    Dong, Aiwu
    Shen, Wen-Hui
    BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2012, 1819 (3-4): : 343 - 348
  • [9] Conformational rearrangements of RIG-I receptor on formation of a multiprotein:dsRNA assembly
    Beckham, Simone A.
    Brouwer, Jason
    Roth, Anna
    Wang, Die
    Sadler, Anthony J.
    John, Matthias
    Jahn-Hofmann, Kerstin
    Williams, Bryan R. G.
    Wilce, Jacqueline A.
    Wilce, Matthew C. J.
    NUCLEIC ACIDS RESEARCH, 2013, 41 (05) : 3436 - 3445
  • [10] Histone chaperones link histone nuclear import and chromatin assembly
    Keck, Kristin M.
    Pemberton, Lucy F.
    BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2012, 1819 (3-4): : 277 - 289