Mutational Landscape of Secondary Glioblastoma Guides MET-Targeted Trial in Brain Tumor

被引:309
作者
Hu, Huimin [1 ]
Mu, Quanhua [2 ,12 ]
Bao, Zhaoshi [1 ,4 ]
Chen, Yiyun [3 ,12 ]
Liu, Yanwei [1 ,5 ]
Chen, Jing [1 ]
Wang, Kuanyu [1 ]
Wang, Zheng [1 ]
Nam, Yoonhee [3 ]
Jiang, Biaobin [2 ,3 ,13 ]
Sa, Jason K. [10 ]
Cho, Hee-Jin [10 ]
Her, Nam-Gu [10 ]
Zhang, Chuanbao [4 ]
Zhao, Zheng [1 ]
Zhang, Ying [1 ]
Zeng, Fan [1 ]
Wu, Fan [1 ]
Kang, Xun [6 ]
Liu, Yuqing [1 ]
Qian, Zenghui [1 ]
Wang, Zhiliang [1 ]
Huang, Ruoyu [1 ]
Wang, Qiangwei [1 ]
Zhang, Wei [4 ]
Qiu, Xiaoguang [5 ]
Li, Wenbin [6 ]
Nam, Do-Hyun [10 ,11 ]
Fan, Xiaolong [7 ]
Wang, Jiguang [2 ,3 ,12 ]
Jiang, Tao [1 ,4 ,8 ,9 ]
机构
[1] Capital Med Univ, Beijing Neurosurg Inst, Beijing 100050, Peoples R China
[2] Hong Kong Univ Sci & Technol, Dept Chem & Biol Engn, Hong Kong, Hong Kong, Peoples R China
[3] Hong Kong Univ Sci & Technol, Div Life Sci, Hong Kong, Hong Kong, Peoples R China
[4] Capital Med Univ, Beijing Tiantan Hosp, Dept Neurosurg, Beijing 100050, Peoples R China
[5] Capital Med Univ, Beijing Tiantan Hosp, Dept Radiotherapy, Beijing 100050, Peoples R China
[6] Capital Med Univ, Beijing Shijitan Hosp, Dept Oncol, Beijing 100050, Peoples R China
[7] Beijing Normal Univ, Lab Neurosci & Brain Dev, Beijing Key Lab Gene Resource & Mol Dev, Beijing 100875, Peoples R China
[8] Beijing Inst Brain Disorders, Ctr Brain Tumor, Beijing 100069, Peoples R China
[9] China Natl Clin Res Ctr Neurol Dis, Beijing 100050, Peoples R China
[10] Samsung Med Ctr, Inst Refractory Canc Res, Seoul, South Korea
[11] Sungkyunkwan Univ, Sch Med, Samsung Med Ctr, Dept Neurosurg, Seoul, South Korea
[12] Hong Kong Univ Sci & Technol, Ctr Syst Biol & Human Hlth, Hong Kong, Hong Kong, Peoples R China
[13] Hong Kong Univ Sci & Technol, Inst Adv Study, Hong Kong, Hong Kong, Peoples R China
基金
中国国家自然科学基金;
关键词
RNA-SEQ; GENOMIC CHARACTERIZATION; REVEALS; EVOLUTION; GLIOMAS; GENE; CHEMORESISTANCE; ARCHITECTURE; PROGRESSION; ACTIVATION;
D O I
10.1016/j.cell.2018.09.038
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Low-grade gliomas almost invariably progress into secondary glioblastoma (sGBM) with limited therapeutic option and poorly understood mechanism. By studying the mutational landscape of 188 sGBMs, we find significant enrichment of TP53 mutations, somatic hypermutation, MET-exon-14-skipping (METex14), PTPRZ1-MET (ZM) fusions, and MET amplification. Strikingly, METex14 frequently co-occurs with ZM fusion and is present in similar to 14% of cases with significantly worse prognosis Subsequent studies show that METex14 promotes glioma progression by prolonging MET activity. Furthermore, we describe a MET kinase inhibitor, PLB-1001, that demonstrates remarkable potency in selectively inhibiting MET-altered tumor cells in pre-clinical models. Importantly, this compound also shows blood-brain barrier permeability and is subsequently applied in a phase I clinical trial that enrolls MET-altered chemo-resistant glioma patients. Encouragingly, PLB-1001 achieves partial response in at least two advanced sGBM patients with rarely significant side effects, underscoring the clinical potential for precisely treating gliomas using this therapy.
引用
收藏
页码:1665 / +
页数:32
相关论文
共 50 条
[1]   Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer [J].
Abate, Francesco ;
Zairis, Sakellarios ;
Ficarra, Elisa ;
Acquaviva, Andrea ;
Wiggins, Chris H. ;
Frattini, Veronique ;
Lasorella, Anna ;
Iavarone, Antonio ;
Inghirami, Giorgio ;
Rabadan, Raul .
BMC SYSTEMS BIOLOGY, 2014, 8
[2]   Signatures of mutational processes in human cancer [J].
Alexandrov, Ludmil B. ;
Nik-Zainal, Serena ;
Wedge, David C. ;
Aparicio, Samuel A. J. R. ;
Behjati, Sam ;
Biankin, Andrew V. ;
Bignell, Graham R. ;
Bolli, Niccolo ;
Borg, Ake ;
Borresen-Dale, Anne-Lise ;
Boyault, Sandrine ;
Burkhardt, Birgit ;
Butler, Adam P. ;
Caldas, Carlos ;
Davies, Helen R. ;
Desmedt, Christine ;
Eils, Roland ;
Eyfjord, Jorunn Erla ;
Foekens, John A. ;
Greaves, Mel ;
Hosoda, Fumie ;
Hutter, Barbara ;
Ilicic, Tomislav ;
Imbeaud, Sandrine ;
Imielinsk, Marcin ;
Jaeger, Natalie ;
Jones, David T. W. ;
Jones, David ;
Knappskog, Stian ;
Kool, Marcel ;
Lakhani, Sunil R. ;
Lopez-Otin, Carlos ;
Martin, Sancha ;
Munshi, Nikhil C. ;
Nakamura, Hiromi ;
Northcott, Paul A. ;
Pajic, Marina ;
Papaemmanuil, Elli ;
Paradiso, Angelo ;
Pearson, John V. ;
Puente, Xose S. ;
Raine, Keiran ;
Ramakrishna, Manasa ;
Richardson, Andrea L. ;
Richter, Julia ;
Rosenstiel, Philip ;
Schlesner, Matthias ;
Schumacher, Ton N. ;
Span, Paul N. ;
Teague, Jon W. .
NATURE, 2013, 500 (7463) :415-+
[3]  
[Anonymous], ALIGNING SEQUENCE RE, DOI DOI 10.48550/ARXIV.1303.3997
[4]   Integrated genomic characterization of IDH1-mutant glioma malignant progression [J].
Bai, Hanwen ;
Harmanci, Akdes Serin ;
Erson-Omay, E. Zeynep ;
Li, Jie ;
Coskun, Sueleyman ;
Simon, Matthias ;
Krischek, Boris ;
Ozduman, Koray ;
Omay, S. Buelent ;
Sorensen, Eric A. ;
Turcan, Sevin ;
Bakirciglu, Mehmet ;
Carrion-Grant, Geneive ;
Murray, Phillip B. ;
Clark, Victoria E. ;
Ercan-Sencicek, A. Gulhan ;
Knight, James ;
Sencar, Leman ;
Altinok, Selin ;
Kaulen, Leon D. ;
Guelez, Burcu ;
Timmer, Marco ;
Schramm, Johannes ;
Mishra-Gorur, Ketu ;
Henegariu, Octavian ;
Moliterno, Jennifer ;
Louvi, Angeliki ;
Chan, Timothy A. ;
Tannheimer, Stacey L. ;
Pamir, M. Necmettin ;
Vortmeyer, Alexander O. ;
Bilguvar, Kaya ;
Yasuno, Katsuhito ;
Guenel, Murat .
NATURE GENETICS, 2016, 48 (01) :59-+
[5]   RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas [J].
Bao, Zhao-Shi ;
Chen, Hui-Min ;
Yang, Ming-Yu ;
Zhang, Chuan-Bao ;
Yu, Kai ;
Ye, Wan-Lu ;
Hu, Bo-Qiang ;
Yan, Wei ;
Zhang, Wei ;
Akers, Johnny ;
Ramakrishnan, Valya ;
Li, Jie ;
Carter, Bob ;
Liu, Yan-Wei ;
Hu, Hui-Min ;
Wang, Zheng ;
Li, Ming-Yang ;
Yao, Kun ;
Qiu, Xiao-Guang ;
Kang, Chun-Sheng ;
You, Yong-Ping ;
Fan, Xiao-Long ;
Song, Wei Sonya ;
Li, Rui-Qiang ;
Su, Xiao-Dong ;
Chen, Clark C. ;
Jiang, Tao .
GENOME RESEARCH, 2014, 24 (11) :1765-1773
[6]   Recurrent MET fusion genes represent a drug target in pediatric glioblastoma [J].
Bender, Sebastian ;
Gronych, Jan ;
Warnatz, Hans-Joerg ;
Hutter, Barbara ;
Groebner, Susanne ;
Ryzhova, Marina ;
Pfaff, Elke ;
Hovestadt, Volker ;
Weinberg, Florian ;
Halbach, Sebastian ;
Kool, Marcel ;
Northcott, Paul A. ;
Sturm, Dominik ;
Bjerke, Lynn ;
Zichner, Thomas ;
Stutz, Adrian M. ;
Schramm, Kathrin ;
Huang, Bingding ;
Buchhalter, Ivo ;
Heinold, Michael ;
Risch, Thomas ;
Worst, Barbara C. ;
van Tilburg, Cornelis M. ;
Weber, Ursula D. ;
Zapatka, Marc ;
Raeder, Benjamin ;
Milford, David ;
Heiland, Sabine ;
von Kalle, Christof ;
Previti, Christopher ;
Lawerenz, Chris ;
Kulozik, Andreas E. ;
Unterberg, Andreas ;
Witt, Olaf ;
von Deimling, Andreas ;
Capper, David ;
Truffaux, Nathalene ;
Grill, Jacques ;
Jabado, Nada ;
Sehested, Astrid M. ;
Sumerauer, David ;
Hmida-Ben Brahim, Dorra ;
Trabelsi, Saoussen ;
Ng, Ho-Keung ;
Zagzag, David ;
Allen, Jeffrey C. ;
Karajannis, Matthias A. ;
Gottardo, Nicholas G. ;
Jones, Chris ;
Korbel, Jan .
NATURE MEDICINE, 2016, 22 (11) :1314-1320
[7]   Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas [J].
Brat, Daniel J. ;
Verhaak, Roel G. W. ;
Al-dape, Kenneth D. ;
Yung, W. K. Alfred ;
Salama, Sofie R. ;
Cooper, Lee A. D. ;
Rheinbay, Esther ;
Miller, C. Ryan ;
Vitucci, Mark ;
Morozova, Olena ;
Robertson, A. Gordon ;
Noushmehr, Houtan ;
Laird, Peter W. ;
Cherniack, Andrew D. ;
Akbani, Rehan ;
Huse, Jason T. ;
Ciriello, Giovanni ;
Poisson, Laila M. ;
Barnholtz-Sloan, Jill S. ;
Berger, Mitchel S. ;
Brennan, Cameron ;
Colen, Rivka R. ;
Colman, Howard ;
Flanders, Adam E. ;
Giannini, Caterina ;
Grifford, Mia ;
Iavarone, Antonio ;
Jain, Rajan ;
Joseph, Isaac ;
Kim, Jaegil ;
Kasaian, Katayoon ;
Mikkelsen, Tom ;
Murray, Bradley A. ;
O'Neill, Brian Patrick ;
Pachter, Lior ;
Parsons, Donald W. ;
Sougnez, Carrie ;
Sulman, Erik P. ;
Vandenberg, Scott R. ;
Van Meir, Erwin G. ;
von Deimling, Andreas ;
Zhang, Hailei ;
Crain, Daniel ;
Lau, Kevin ;
Mallery, David ;
Morris, Scott ;
Paulauskis, Joseph ;
Penny, Robert ;
Shelton, Troy ;
Sherman, Mark .
NEW ENGLAND JOURNAL OF MEDICINE, 2015, 372 (26) :2481-2498
[8]   Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma [J].
Ceccarelli, Michele ;
Barthel, Floris P. ;
Malta, Tathiane M. ;
Sabedot, Thais S. ;
Salama, Sofie R. ;
Murray, Bradley A. ;
Morozova, Olena ;
Newton, Yulia ;
Radenbaugh, Amie ;
Pagnotta, Stefano M. ;
Anjum, Samreen ;
Wang, Jiguang ;
Manyam, Ganiraju ;
Zoppoli, Pietro ;
Ling, Shiyun ;
Rao, Arjun A. ;
Grifford, Mia ;
Cherniack, Andrew D. ;
Zhang, Hailei ;
Poisson, Laila ;
Carlotti, Carlos Gilberto, Jr. ;
Tirapelli, Daniela Pretti da Cunha ;
Rao, Arvind ;
Mikkelsen, Tom ;
Lau, Ching C. ;
Yung, W. K. Alfred ;
Rabadan, Raul ;
Huse, Jason ;
Brat, Daniel J. ;
Lehman, Norman L. ;
Barnholtz-Sloan, Jill S. ;
Zheng, Siyuan ;
Hess, Kenneth ;
Rao, Ganesh ;
Meyerson, Matthew ;
Beroukhim, Rameen ;
Cooper, Lee ;
Akbani, Rehan ;
Wrensch, Margaret ;
Haussler, David ;
Aldape, Kenneth D. ;
Laird, Peter W. ;
Gutmann, David H. ;
Noushmehr, Houtan ;
Iavarone, Antonio ;
Verhaak, Roel G. W. .
CELL, 2016, 164 (03) :550-563
[9]   Modelling of the blood-brain barrier in drug discovery and development [J].
Cecchelli, Romeo ;
Berezowski, Vincent ;
Lundquist, Stefan ;
Culot, Maxime ;
Renftel, Mila ;
Dehouck, Marie-Pierre ;
Fenart, Laurence .
NATURE REVIEWS DRUG DISCOVERY, 2007, 6 (08) :650-661
[10]   Comprehensive genomic characterization defines human glioblastoma genes and core pathways [J].
Chin, L. ;
Meyerson, M. ;
Aldape, K. ;
Bigner, D. ;
Mikkelsen, T. ;
VandenBerg, S. ;
Kahn, A. ;
Penny, R. ;
Ferguson, M. L. ;
Gerhard, D. S. ;
Getz, G. ;
Brennan, C. ;
Taylor, B. S. ;
Winckler, W. ;
Park, P. ;
Ladanyi, M. ;
Hoadley, K. A. ;
Verhaak, R. G. W. ;
Hayes, D. N. ;
Spellman, Paul T. ;
Absher, D. ;
Weir, B. A. ;
Ding, L. ;
Wheeler, D. ;
Lawrence, M. S. ;
Cibulskis, K. ;
Mardis, E. ;
Zhang, Jinghui ;
Wilson, R. K. ;
Donehower, L. ;
Wheeler, D. A. ;
Purdom, E. ;
Wallis, J. ;
Laird, P. W. ;
Herman, J. G. ;
Schuebel, K. E. ;
Weisenberger, D. J. ;
Baylin, S. B. ;
Schultz, N. ;
Yao, Jun ;
Wiedemeyer, R. ;
Weinstein, J. ;
Sander, C. ;
Gibbs, R. A. ;
Gray, J. ;
Kucherlapati, R. ;
Lander, E. S. ;
Myers, R. M. ;
Perou, C. M. ;
McLendon, Roger .
NATURE, 2008, 455 (7216) :1061-1068