Force field parametrization for 6-aminopenicillanic acid

被引:7
|
作者
Stroganov, OV [1 ]
Chilov, GG [1 ]
Svedas, VK [1 ]
机构
[1] Moscow MV Lomonosov State Univ, Belozersky Inst Phys Chem Biol, Dept Biokinet, Moscow 119992, Russia
来源
关键词
force field parametrization; AMBER force field; 6-ammopenicillanic acid; beta-lactam nucleus;
D O I
10.1016/S0166-1280(03)00231-8
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A complete set of AMBER force field parameters for 6-aminopenicillanic acid, crucial moiety of beta-lactam antibiotics, has been developed. Equilibrium geometry was derived from RHF/6-31G* calculations, stretching constants were computed from quantum mechanical hessian, partial atomic charges were assigned according to restrained electrostatic potential fit methodology. Torsional parameters were also derived from quantum mechanical calculations. It was shown that unusual chemical structure of 6-aminopenicillanic acid with two merged four- and five-member rings has found its reflection in the set of molecular mechanical parameters: a number of bonds and angles appeared to be much more rigid than those described by classic AMBER field. The quality of derived set parameters was attested by computing molecular geometry, spectroscopic and thermodynamic proper-ties. (C) 2003 Elsevier B.V. All rights reserved.
引用
收藏
页码:117 / 125
页数:9
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