Platform technology to identify potential disease markers and establish heritability and environmental determinants of the human serum N-glycome

被引:8
作者
Tharmalingam, Tharmala [1 ]
Marino, Karina [1 ]
Rudd, Pauline M. [1 ]
机构
[1] Univ Coll Dublin, Conway Inst, Dublin Oxford Glycobiol Lab, Natl Inst Bioproc Res & Training, Dublin 4, Ireland
关键词
Biomarker; Glycomics; High-throughput; Serum N-glycans; OVARIAN-CANCER; RHEUMATOID-ARTHRITIS; GLYCAN ANALYSIS; CELL-ADHESION; E-CADHERIN; ASSOCIATION; GLYCOSYLATION; POLYMORPHISMS; GENE; DATABASE;
D O I
10.1016/j.carres.2010.04.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Glycomics has been proven to be challenging when compared to genomics, transcriptomics, or proteomics. Understanding glycans is difficult as they have a non-template driven biosynthesis and their structural characterization requires highly efficient techniques. This review will describe the robotic platform developed in our laboratory for high-throughput analysis of N-glycans, and some of the advances obtained in the Glyco-biomarker field obtained in the last three years, including the first Genome-Wide Association Study showing a direct link between DNA polymorphisms and glycosylation. (C) 2010 Elsevier Ltd. All rights reserved.
引用
收藏
页码:1280 / 1282
页数:3
相关论文
共 29 条
[1]   On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database [J].
Apweiler, R ;
Hermjakob, H ;
Sharon, N .
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 1999, 1473 (01) :4-8
[2]   Detailed glycan analysis of serum glycoproteins of patients with congenital disorders of glycosylation indicates the specific defective glycan processing step and provides an insight into pathogenesis [J].
Butler, M ;
Quelhas, D ;
Critchley, AJ ;
Carchon, H ;
Hebestreit, HF ;
Hibbert, RG ;
Vilarinho, L ;
Teles, E ;
Matthijs, G ;
Schollen, E ;
Argibay, P ;
Harvey, DJ ;
Dwek, RA ;
Jaeken, J ;
Rudd, PM .
GLYCOBIOLOGY, 2003, 13 (09) :601-622
[3]   GlycoBase and autoGU: tools for HPLC-based glycan analysis [J].
Campbell, Matthew P. ;
Royle, Louise ;
Radcliffe, Catherine M. ;
Dwek, Raymond A. ;
Rudd, Pauline M. .
BIOINFORMATICS, 2008, 24 (09) :1214-1216
[4]  
Domann Paula Jane, 2007, Proteomics, V7 Suppl 1, P70
[5]  
Freeze HH, 2006, NAT REV GENET, V7, P537, DOI 10.1038/nrg1894
[6]   The expression of core fucosylated E-cadherin in cancer cells and lung cancer patients: prognostic implications [J].
Geng, F ;
Shi, BZ ;
Yuan, YF ;
Wu, XZ .
CELL RESEARCH, 2004, 14 (05) :423-433
[7]   The changes in monosaccharide composition of immunoglobulin G in the course of rheumatoid arthritis [J].
Gindzienska-Sieskiewicz, Ewa ;
Klimiuk, Piotr Adrian ;
Kisiel, Dariusz Gabriel ;
Gindzienski, Andrzej ;
Sierakowski, Stanislaw .
CLINICAL RHEUMATOLOGY, 2007, 26 (05) :685-690
[8]   Association of estrogen receptor 2 gene polymorphisms with obesity in women (obesity and estrogen receptor 2 gene) [J].
Goulart, A. C. ;
Zee, R. Y. L. ;
Rexrode, K. M. .
MATURITAS, 2009, 62 (02) :179-183
[9]   CURRENT CONCEPTS Genomewide Association Studies and Human Disease [J].
Hardy, John ;
Singleton, Andrew .
NEW ENGLAND JOURNAL OF MEDICINE, 2009, 360 (17) :1759-1768
[10]   Carbohydrate-mediated cell adhesion in cancer metastasis and angiogenesis [J].
Kannagi, R ;
Izawa, M ;
Koike, T ;
Miyazaki, K ;
Kimura, N .
CANCER SCIENCE, 2004, 95 (05) :377-384