The genetic architecture of type 1 diabetes mellitus

被引:54
作者
Nyaga, Denis M. [1 ]
Vickers, Mark H. [1 ]
Jefferies, Craig [1 ,2 ]
Perry, Jo K. [1 ]
O'Sullivan, Justin M. [1 ]
机构
[1] Univ Auckland, Liggins Inst, Auckland, New Zealand
[2] Starship Childrens Hlth, Auckland, New Zealand
关键词
Type; 1; diabetes; Beta-cell autoimmunity; Single nucleotide polymorphisms (SNPs); Genome-wide association studies (GWAS); Human leukocyte antigen (HLA); Genome organization; HLA CLASS-II; SINGLE-NUCLEOTIDE POLYMORPHISM; GENOME-WIDE ASSOCIATION; ENTEROVIRUS INFECTION; TYROSINE-PHOSPHATASE; INSULIN EXPRESSION; JAPANESE PATIENTS; CELIAC-DISEASE; ADULT-ONSET; COPY-NUMBER;
D O I
10.1016/j.mce.2018.06.002
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Type 1 diabetes mellitus (T1D) is a complex autoimmune disorder characterised by loss of the insulin-producing pancreatic beta cells in genetically predisposed individuals, ultimately resulting in insulin deficiency and hyperglycaemia. T1D is most common among children and young adults, and the incidence is on the rise across the world. The aetiology of T1D is hypothesized to involve genetic and environmental factors that result in the T-cell mediated destruction of pancreatic beta cells. There is a strong genetic risk to T1D; with genome-wide association studies (GWAS) identifying over 60 susceptibility regions within the human genome which are marked by single nucleotide polymorphisms (SNPs). Here, we review what is currently known about the genetics of T1D. We argue that advancing our understanding of the aetiology and pathogenesis of T1D will require the integration of genome biology (omics-data) with GWAS data, thereby making it possible to elucidate the putative gene regulatory networks modulated by disease-associated SNPs. This approach has a potential to revolutionize clinical management of T1D in an era of precision medicine.
引用
收藏
页码:70 / 80
页数:11
相关论文
共 140 条
[1]   Novel subgroups of adult-onset diabetes and their association with outcomes: a data-driven cluster analysis of six variables [J].
Ahlqvist, Emma ;
Storm, Petter ;
Karajamaki, Annemari ;
Martinell, Mats ;
Dorkhan, Mozhgan ;
Carlsson, Annelie ;
Vikman, Petter ;
Prasad, Rashmi B. ;
Aly, Dina Mansour ;
Almgren, Peter ;
Wessman, Ylva ;
Shaat, Nael ;
Spegel, Peter ;
Mulder, Hindrik ;
Lindholm, Eero ;
Melander, Olle ;
Hansson, Ola ;
Malmqvist, Ulf ;
Lernmark, Ake ;
Lahti, Kaj ;
Forsen, Tom ;
Tuomi, Tiinamaija ;
Rosengren, Anders H. ;
Groop, Leif .
LANCET DIABETES & ENDOCRINOLOGY, 2018, 6 (05) :361-369
[2]  
Amer Diabet Assoc, 2012, DIABETES CARE, V35, pS64, DOI [10.2337/dc09-S062, 10.2337/dc12-S064, 10.2337/dc19-S002, 10.2337/dc18-S002]
[3]  
[Anonymous], 2014, PLOS ONE
[4]   Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes [J].
Barrett, Jeffrey C. ;
Clayton, David G. ;
Concannon, Patrick ;
Akolkar, Beena ;
Cooper, Jason D. ;
Erlich, Henry A. ;
Julier, Cecile ;
Morahan, Grant ;
Nerup, Jorn ;
Nierras, Concepcion ;
Plagnol, Vincent ;
Pociot, Flemming ;
Schuilenburg, Helen ;
Smyth, Deborah J. ;
Stevens, Helen ;
Todd, John A. ;
Walker, Neil M. ;
Rich, Stephen S. .
NATURE GENETICS, 2009, 41 (06) :703-707
[5]   Replication and further characterization of a Type 1 diabetes-associated locus at the telomeric end of the major histocompatibility complex [J].
Baschal, Erin E. ;
Sarkar, Suparna A. ;
Boyle, Theresa A. ;
Siebert, Janet C. ;
Jasinski, Jean M. ;
Grabek, Katharine R. ;
Armstrong, Taylor K. ;
Babu, Sunanda R. ;
Fain, Pamela R. ;
Steck, Andrea K. ;
Rewers, Marian J. ;
Eisenbarth, George S. .
JOURNAL OF DIABETES, 2011, 3 (03) :238-247
[6]   A SPECIFIC HLA-DP-BETA ALLELE IS ASSOCIATED WITH PAUCIARTICULAR JUVENILE RHEUMATOID-ARTHRITIS BUT NOT ADULT RHEUMATOID-ARTHRITIS [J].
BEGOVICH, AB ;
BUGAWAN, TL ;
NEPOM, BS ;
KLITZ, W ;
NEPOM, GT ;
ERLICH, HA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1989, 86 (23) :9489-9493
[7]   A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis [J].
Begovich, AB ;
Carlton, VEH ;
Honigberg, LA ;
Schrodi, SJ ;
Chokkalingam, AP ;
Alexander, HC ;
Ardlie, KG ;
Huang, QQ ;
Smith, AM ;
Spoerke, JM ;
Conn, MT ;
Chang, M ;
Chang, SYP ;
Saiki, RK ;
Catanese, JJ ;
Leong, DU ;
Garcia, VE ;
McAllister, LB ;
Jeffery, DA ;
Lee, AT ;
Batliwalla, F ;
Remmers, E ;
Criswell, LA ;
Seldin, MF ;
Kastner, DL ;
Amos, CI ;
Sninsky, JJ ;
Gregersen, PK .
AMERICAN JOURNAL OF HUMAN GENETICS, 2004, 75 (02) :330-337
[8]   SUSCEPTIBILITY TO HUMAN TYPE-1 DIABETES AT IDDM2 IS DETERMINED BY TANDEM REPEAT VARIATION AT THE INSULIN GENE MINISATELLITE LOCUS [J].
BENNETT, ST ;
LUCASSEN, AM ;
GOUGH, SCL ;
POWELL, EE ;
UNDLIEN, DE ;
PRITCHARD, LE ;
MERRIMAN, ME ;
KAWAGUCHI, Y ;
DRONSFIELD, MJ ;
POCIOT, F ;
NERUP, J ;
BOUZEKRI, N ;
CAMBONTHOMSEN, A ;
RONNINGEN, KS ;
BARNETT, AH ;
BAIN, SC ;
TODD, JA .
NATURE GENETICS, 1995, 9 (03) :284-292
[9]   Identification of Novel Type 1 Diabetes Candidate Genes by Integrating Genome-Wide Association Data, Protein-Protein Interactions, and Human Pancreatic Islet Gene Expression [J].
Bergholdt, Regine ;
Brorsson, Caroline ;
Palleja, Albert ;
Berchtold, Lukas A. ;
Floyel, Tina ;
Bang-Berthelsen, Claus Heiner ;
Frederiksen, Klaus Stensgaard ;
Jensen, Lars Juhl ;
Storling, Joachim ;
Pociot, Flemming .
DIABETES, 2012, 61 (04) :954-962
[10]  
Bilbao J. R., 2006, ANN NY ACAD SCI, V958, P321, DOI [10.1111/j.1749-6632.2002.tb02996.x, DOI 10.1111/J.1749-6632.2002.TB02996.X]