Optimization of Protein Crystallization: The OptiCryst Project

被引:12
作者
Garcia-Caballero, Alfonso [1 ]
Gavira, Jose A. [1 ]
Pineda-Molina, Estela [1 ]
Chayen, Naomi E. [2 ]
Govada, Lata [2 ]
Khurshid, Sahir [2 ]
Saridakis, Emmanuel [2 ]
Boudjemline, Attia [3 ]
Swann, Marcus J. [3 ]
Stewart, Patrick Shaw [4 ]
Briggs, Richard A. [4 ]
Kolek, Stefan A. [4 ]
Oberthuer, Dominik [5 ]
Dierks, Karsten [5 ]
Betzel, Christian [5 ]
Santana, Martha [6 ]
Hobbs, Jeanette R. [7 ]
Thaw, Paul [7 ]
Savill, Tony J. [7 ]
Mesters, Jeroen R. [8 ]
Hilgenfeld, Rolf [8 ]
Bonander, Nicklas [9 ]
Bill, Roslyn M. [9 ]
机构
[1] Inst Andaluz Ciencias Tierra CSIC UGR, Lab Estudios Crystalog, PTS, Granada 18100, Spain
[2] Univ London Imperial Coll Sci Technol & Med, Fac Med, Dept Surg & Canc, London SW7 2AZ, England
[3] Farfield Grp Ltd, Crewe CW1 6GU, Cheshire, England
[4] Douglas Instruments Ltd, Hungerford RG17 7HD, Berks, England
[5] Univ Hamburg, Lab Struct Biol Infect & Inflammat, DESY, Inst Biochem & Mol Biol, D-22603 Hamburg, Germany
[6] Triana Sci & Technol, PTS, Granada 18100, Spain
[7] Mol Dimens Ltd, Newmarket CB8 7SQ, Suffolk, England
[8] Med Univ Lubeck, Ctr Struct & Cell Biol Med, Inst Biochem, D-23538 Lubeck, Germany
[9] Aston Univ, Sch Life & Hlth Sci, Birmingham B4 7ET, W Midlands, England
关键词
DYNAMIC LIGHT-SCATTERING; CRYSTALLOGRAPHIC STRUCTURE DETERMINATION; CRYSTAL-GROWTH; COUNTER-DIFFUSION; LUCINA-PECTINATA; C1; DOMAIN; NUCLEATION; COUNTERDIFFUSION; MACROMOLECULES; EVAPORATION;
D O I
10.1021/cg1013768
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Protein crystallization has gained a new strategic and commercial relevance in the postgenomic era due to its pivotal role in structural genomics. Producing high quality crystals has always been a bottleneck to efficient structure determination, and this problem is becoming increasingly acute. This is especially true for challenging, therapeutically important proteins that typically do not form suitable crystals. The OptiCryst consortium has focused on relieving this bottleneck by making a concerted effort to improve the crystallization techniques usually employed, designing new crystallization tools, and applying such developments to the optimization of target protein crystals. In particular, the focus has been on the novel application of dual polarization interferometry (DPI) to detect suitable nucleation; the application of in situ dynamic light scattering (DLS) to monitor and analyze the process of crystallization; the use of UV-fluorescence to differentiate protein crystals from salt; the design of novel nucleants and seeding technologies; and the development of kits for capillary counterdiffusion and crystal growth in gels. The consortium collectively handled 60 new target proteins that had not been crystallized previously. From these, we generated 39 crystals with improved diffraction properties. Fourteen of these 39 were only obtainable using OptiCryst methods. For the remaining 25, OptiCryst methods were used in combination with standard crystallization techniques. Eighteen structures have already been solved (30% success rate), with several more in the pipeline.
引用
收藏
页码:2112 / 2121
页数:10
相关论文
共 51 条
[31]   Selective in vitro glycosylation of recombinant proteins: semi-synthesis of novel homogeneous glycoforms of human erythropoietin [J].
Macmillan, D ;
Bill, RM ;
Sage, KA ;
Fern, D ;
Flitsch, SL .
CHEMISTRY & BIOLOGY, 2001, 8 (02) :133-145
[32]   LIGHT-SCATTERING INVESTIGATIONS OF NUCLEATION PROCESSES AND KINETICS OF CRYSTALLIZATION IN MACROMOLECULAR SYSTEMS [J].
MALKIN, A ;
MCPHERSON, A .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1994, 50 :385-395
[33]   Structure of dihydropyrimidinase from Sinorhizobium meliloti CECT4114: New features in an amidohydrolase family member [J].
Martinez-Rodriguez, Sergio ;
Isabel Martinez-Gomez, Ana ;
Maria Clemente-Jimenez, Josefa ;
Rodriguez-Vico, Felipe ;
Ma Garcia-Ruiz, Juan ;
Las Heras-Vazquez, Francisco Javier ;
Antonio Gavira, Jose .
JOURNAL OF STRUCTURAL BIOLOGY, 2010, 169 (02) :200-208
[34]  
Matte Allan, 2007, American Biotechnology Laboratory, V25
[35]   HETEROGENEOUS AND EPITAXIAL NUCLEATION OF PROTEIN CRYSTALS ON MINERAL SURFACES [J].
MCPHERSON, A ;
SHLICHTA, P .
SCIENCE, 1988, 239 (4838) :385-387
[36]  
McPherson A., 1999, CRYSTALLIZATION BIOL
[37]   Development of a technology for automation and miniaturization of protein crystallization [J].
Mueller, U ;
Nyarsik, L ;
Horn, M ;
Rauth, H ;
Przewieslik, T ;
Saenger, W ;
Lehrach, H ;
Eickhoff, H .
JOURNAL OF BIOTECHNOLOGY, 2001, 85 (01) :7-14
[38]   Protein crystallization by capillary counterdiffusion for applied crystallographic structure determination [J].
Ng, JD ;
Gavira, JA ;
García-Ruíz, JM .
JOURNAL OF STRUCTURAL BIOLOGY, 2003, 142 (01) :218-231
[39]   Two-step counterdiffusion protocol for the crystallization of haemoglobin II from Lucina pectinata in the pH range 4-9 [J].
Nieves-Marrero, Carlos A. ;
Ruiz-Martinez, Carlos R. ;
Estremera-Andujar, Rafael A. ;
Gonzalez-Ramirez, Luis A. ;
Lopez-Garriga, Juan ;
Gavira, Jose A. .
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2010, 66 :264-268
[40]   A crystallization plate for controlling evaporation in hanging drops [J].
Nneji, GA ;
Chayen, NE .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2004, 37 :502-503