Reference Gene Selection in the Desert Plant Eremosparton songoricum

被引:25
作者
Li, Xiao-Shuang [1 ,2 ]
Yang, Hong-Lan [1 ]
Zhang, Dao-Yuan [1 ]
Zhang, Yuan-Ming [1 ]
Wood, Andrew J. [3 ]
机构
[1] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, Key Lab Biogeog & Bioresource Arid Land, Urumqi 830011, Peoples R China
[2] Chinese Acad Sci, Grad Univ, Beijing 100049, Peoples R China
[3] So Illinois Univ, Dept Plant Biol, Carbondale, IL 62901 USA
关键词
Eremosparton songoricum; quantitative real-time PCR; reference genes; geNorm; validation; TIME RT-PCR; POLYMERASE-CHAIN-REACTION; BINDING TRANSCRIPTION FACTOR; INTERNAL REFERENCE GENES; FUNCTIONAL-CHARACTERIZATION; SALT TOLERANCE; EXPRESSION; NORMALIZATION; IDENTIFICATION; VALIDATION;
D O I
10.3390/ijms13066944
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Eremosparton songoricum (Litv.) Vass. (E. songoricum) is a rare and extremely drought-tolerant desert plant that holds promise as a model organism for the identification of genes associated with water deficit stress. Here, we cloned and evaluated the expression of eight candidate reference genes using quantitative real-time reverse transcriptase polymerase chain reactions. The expression of these candidate reference genes was analyzed in a diverse set of 20 samples including various E. songoricum plant tissues exposed to multiple environmental stresses. GeNorm analysis indicated that expression stability varied between the reference genes in the different experimental conditions, but the two most stable reference genes were sufficient for normalization in most conditions. EsEF and Esa-TUB were sufficient for various stress conditions, EsEF and EsACT were suitable for samples of differing germination stages, and EsGAPDHand EsUBQ were most stable across multiple adult tissue samples. The Es18S gene was unsuitable as a reference gene in our analysis. In addition, the expression level of the drought-stress related transcription factor EsDREB2 verified the utility of E. songoricum reference genes and indicated that no single gene was adequate for normalization on its own. This is the first systematic report on the selection of reference genes in E. songoricum, and these data will facilitate future work on gene expression in this species.
引用
收藏
页码:6944 / 6963
页数:20
相关论文
共 58 条
  • [1] Role of DREB transcription factors in abiotic and biotic stress tolerance in plants
    Agarwal, Pradeep K.
    Agarwal, Parinita
    Reddy, M. K.
    Sopory, Sudhir K.
    [J]. PLANT CELL REPORTS, 2006, 25 (12) : 1263 - 1274
  • [2] Ahmad S, 2009, PAK J BOT, V41, P647
  • [3] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Altschul, SF
    Madden, TL
    Schaffer, AA
    Zhang, JH
    Zhang, Z
    Miller, W
    Lipman, DJ
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
  • [4] BASIC LOCAL ALIGNMENT SEARCH TOOL
    ALTSCHUL, SF
    GISH, W
    MILLER, W
    MYERS, EW
    LIPMAN, DJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
  • [5] Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data
    Artico, Sinara
    Nardeli, Sarah M.
    Neto, Osmundo B. Oliveira
    Grossi-de-Sa, Maria Fatima
    Alves-Ferreira, Marcio
    [J]. BMC PLANT BIOLOGY, 2010, 10
  • [6] Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions
    Barsalobres-Cavallari, Carla F.
    Severino, Fabio E.
    Maluf, Mirian P.
    Maia, Ivan G.
    [J]. BMC MOLECULAR BIOLOGY, 2009, 10
  • [7] Selection of endogenous genes for gene expression studies in Eucalyptus under biotic (Puccinia psidii) and abiotic (acibenzolar-S-methyl) stresses using RT-qPCR
    Boava L.P.
    Laia M.L.
    Jacob T.R.
    Dabbas K.M.
    Gonçalves J.F.
    Ferro J.A.
    Ferro M.I.
    Furtado E.L.
    [J]. BMC Research Notes, 3 (1)
  • [8] Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
    Bustin, SA
    [J]. JOURNAL OF MOLECULAR ENDOCRINOLOGY, 2000, 25 (02) : 169 - 193
  • [9] The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments
    Bustin, Stephen A.
    Benes, Vladimir
    Garson, Jeremy A.
    Hellemans, Jan
    Huggett, Jim
    Kubista, Mikael
    Mueller, Reinhold
    Nolan, Tania
    Pfaffl, Michael W.
    Shipley, Gregory L.
    Vandesompele, Jo
    Wittwer, Carl T.
    [J]. CLINICAL CHEMISTRY, 2009, 55 (04) : 611 - 622
  • [10] Reference gene selection for real-time quantitative polymerase chain reaction normalization in "Swingle" citrumelo under drought stress
    Carvalho, K.
    de Campos, M. K. F.
    Pereira, L. F. P.
    Vieira, L. G. E.
    [J]. ANALYTICAL BIOCHEMISTRY, 2010, 402 (02) : 197 - 199