CT-Based Radiomics and Deep Learning for BRCA Mutation and Progression-Free Survival Prediction in Ovarian Cancer Using a Multicentric Dataset

被引:28
作者
Avesani, Giacomo [1 ]
Tran, Huong Elena [1 ]
Cammarata, Giulio [2 ]
Botta, Francesca [3 ]
Raimondi, Sara [2 ]
Russo, Luca [1 ]
Persiani, Salvatore [1 ]
Bonatti, Matteo [4 ]
Tagliaferri, Tiziana [5 ]
Dolciami, Miriam [1 ]
Celli, Veronica [6 ]
Boldrini, Luca [1 ]
Lenkowicz, Jacopo [1 ]
Pricolo, Paola [7 ]
Tomao, Federica [8 ]
Rizzo, Stefania Maria Rita [9 ,10 ]
Colombo, Nicoletta [11 ,12 ]
Manganaro, Lucia [6 ]
Fagotti, Anna [13 ,14 ]
Scambia, Giovanni [13 ,14 ]
Gui, Benedetta [1 ]
Manfredi, Riccardo [1 ,14 ]
机构
[1] Fdn Policlin Univ Agostino Gemelli IRCCS, Dept Bioimaging Radiat Oncol & Hematol, Largo A Gemelli 8, I-00168 Rome, Italy
[2] IEO European Inst Oncol IRCCS, Dept Expt Oncol, Via Ripamonti 435, I-20141 Milan, Italy
[3] IEO European Inst Oncol IRCCS, Med Phys Unit, Via Ripamonti 435, I-20141 Milan, Italy
[4] Osped Cent Bolzano, Radiol Unit, Via Lorenz Bohler 5, I-39100 Bolzano, Italy
[5] Osped Cent Bolzano, Gynecol & Obstet Unit, Via Lorenz Bohler 5, I-39100 Bolzano, Italy
[6] Sapienza Univ Rome, Dept Radiol Oncol & Pathol Sci, Piazzale Aldo Moro 5, I-00185 Rome, Italy
[7] European Inst Oncol IRCCS, Div Radiol, Via Ripamonti 435, I-20141 Milan, Italy
[8] Sapienza Univ Rome, Dept Maternal & Child Hlth & Urol Sci, Piazzale Aldo Moro 5, I-00185 Rome, Italy
[9] Ist Imaging Svizzera Italiana IIMSI, Clin Radiol EOC, Via Tesserete 46, CH-6900 Lugano, Switzerland
[10] Univ Svizzera Italiana USI, Fac Sci Biomed, Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
[11] European Inst Oncol IRCCS, Med Gynecol Oncol Unit, Via Ripamonti 435, I-20141 Milan, Italy
[12] Univ Milano Bicocca, Piazza dellAteneo Nuovo 1, I-20126 Milan, Italy
[13] Fdn Policlin Univ Agostino Gemelli IRCCS, Dept Woman Child & Publ Hlth, Largo A Gemelli 8, I-00168 Rome, Italy
[14] Univ Cattolica Sacro Cuore, Largo Francesco Vito 1, I-00168 Rome, Italy
关键词
ovarian cancer; radiomics; computed tomography; machine learning; CHALLENGES;
D O I
10.3390/cancers14112739
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Simple Summary Ovarian cancer has a heterogeneous response to treatment, and relapse may vary considerably. Different studies investigated the role of radiomics in ovarian cancer. However, many of them were performed in a single center, and solid external validation of findings is still missing. We used a multicentric database of high-grade serous ovarian cancer to build predictive radiomic and deep-learning models for early relapse and BRCA mutation, validating them in a different set of cases coming from other institutions. In our multicentric dataset, representative of a real-life clinical scenario, we could not find a good radiomic predicting model for PFS and BRCA mutational status with both traditional radiomics and deep learning methods. This study highlights that to implement the radiomics approach in clinical routine, we still need standardization of acquisition protocols, validation of harmonization method and radiomic pipelines, other than robust, prospective, multicentric, external validations of findings. Purpose: Build predictive radiomic models for early relapse and BRCA mutation based on a multicentric database of high-grade serous ovarian cancer (HGSOC) and validate them in a test set coming from different institutions. Methods: Preoperative CTs of patients with HGSOC treated at four referral centers were retrospectively acquired and manually segmented. Hand-crafted features and deep radiomics features were extracted respectively by dedicated software (MODDICOM) and a dedicated convolutional neural network (CNN). Features were selected with and without prior harmonization (ComBat harmonization), and models were built using different machine learning algorithms, including clinical variables. Results: We included 218 patients. Radiomic models showed low performance in predicting both BRCA mutation (AUC in test set between 0.46 and 0.59) and 1-year relapse (AUC in test set between 0.46 and 0.56); deep learning models demonstrated similar results (AUC in the test of 0.48 for BRCA and 0.50 for relapse). The inclusion of clinical variables improved the performance of the radiomic models to predict BRCA mutation (AUC in the test set of 0.74). Conclusions: In our multicentric dataset, representative of a real-life clinical scenario, we could not find a good radiomic predicting model for PFS and BRCA mutational status, with both traditional radiomics and deep learning, but the combination of clinical and radiomic models improved model performance for the prediction of BRCA mutation. These findings highlight the need for standardization through the whole radiomic pipelines and robust multicentric external validations of results.
引用
收藏
页数:16
相关论文
共 44 条
  • [1] Preoperative Prediction of Metastasis for Ovarian Cancer Based on Computed Tomography Radiomics Features and Clinical Factors
    Ai, Yao
    Zhang, Jindi
    Jin, Juebin
    Zhang, Ji
    Zhu, Haiyan
    Jin, Xiance
    [J]. FRONTIERS IN ONCOLOGY, 2021, 11
  • [2] Integration of proteomics with CT-based qualitative and radiomic features in high-grade serous ovarian cancer patients: an exploratory analysis
    Beer, Lucian
    Sahin, Hilal
    Bateman, Nicholas W.
    Blazic, Ivana
    Vargas, Hebert Alberto
    Veeraraghavan, Harini
    Kirby, Justin
    Fevrier-Sullivan, Brenda
    Freymann, John B.
    Jaffe, C. Carl
    Brenton, James
    Micco, Maura
    Nougaret, Stephanie
    Darcy, Kathleen M.
    Maxwell, G. Larry
    Conrads, Thomas P.
    Huang, Erich
    Sala, Evis
    [J]. EUROPEAN RADIOLOGY, 2020, 30 (08) : 4306 - 4316
  • [3] Radiomics of CT Features May Be Nonreproducible and Redundant: Influence of CT Acquisition Parameters
    Berenguer, Roberto
    del Rosario Pastor-Juan, Maria
    Canales-Vazquez, Jesus
    Castro-Garcia, Miguel
    Villas, Maria Victoria
    Mansilla Legorburo, Francisco
    Sabater, Sebastia
    [J]. RADIOLOGY, 2018, 288 (02) : 407 - 415
  • [4] Survival effect of maximal cytoreductive surgery for advanced ovarian carcinoma during the platinum era: A meta-analysis
    Bristow, RE
    Tomacruz, RS
    Armstrong, DK
    Trimble, EL
    Montz, FJ
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2002, 20 (05) : 1248 - 1259
  • [5] Training Strategies for Radiology Deep Learning Models in Data-limited Scenarios
    Candemir, Sema
    Nguyen, Xuan, V
    Folio, Les R.
    Prevedello, Luciano M.
    [J]. RADIOLOGY-ARTIFICIAL INTELLIGENCE, 2021, 3 (06)
  • [6] A CT-based radiomics nomogram for predicting early recurrence in patients with high-grade serous ovarian cancer
    Chen, Hui-zhu
    Wang, Xin-rong
    Zhao, Fu-min
    Chen, Xi-jian
    Li, Xue-sheng
    Ning, Gang
    Guo, Ying-kun
    [J]. EUROPEAN JOURNAL OF RADIOLOGY, 2021, 145
  • [7] The Development and Validation of a CT-Based Radiomics Nomogram to Preoperatively Predict Lymph Node Metastasis in High-Grade Serous Ovarian Cancer
    Chen, Hui-zhu
    Wang, Xin-rong
    Zhao, Fu-min
    Chen, Xi-jian
    Li, Xue-sheng
    Ning, Gang
    Guo, Ying-kun
    [J]. FRONTIERS IN ONCOLOGY, 2021, 11
  • [8] Update on the secondary cytoreduction in platinum-sensitive recurrent ovarian cancer: a narrative review
    Conte, Carmine
    Fagotti, Anna
    Avesani, Giacomo
    Trombadori, Charlotte
    Federico, Alex
    D'Indinosante, Marco
    Giudice, Maria Teresa
    Pelligra, Silvia
    Lodoli, Claudio
    Marchetti, Claudia
    Ferrandina, Gabriella
    Scambia, Giovanni
    Gallotta, Valerio
    [J]. ANNALS OF TRANSLATIONAL MEDICINE, 2021, 9 (06)
  • [9] Dinapoli N, 2015, IEEE ENG MED BIO, P771, DOI 10.1109/EMBC.2015.7318476
  • [10] Role of Surgical Outcome as Prognostic Factor in Advanced Epithelial Ovarian Cancer: A Combined Exploratory Analysis of 3 Prospectively Randomized Phase 3 Multicenter Trials By the Arbeitsgemeinschaft Gynaekologische Onkologie Studiengruppe Ovarialkarzinom (AGO-OVAR) and the Groupe d'Investigateurs Nationaux Pour les Etudes des Cancers de l'Ovaire (GINECO)
    du Bois, Andreas
    Reuss, Alexander
    Pujade-Lauraine, Eric
    Harter, Philipp
    Ray-Coquard, Isabelle
    Pfisterer, Jacobus
    [J]. CANCER, 2009, 115 (06) : 1234 - 1244