Raman spectroscopy and machine learning for the classification of esophageal squamous carcinoma

被引:21
作者
Huang, Wenhua [1 ]
Shang, Qixin [1 ]
Xiao, Xin [1 ]
Zhang, Hanlu [1 ]
Gu, Yimin [1 ]
Yang, Lin [1 ]
Shi, Guidong [1 ]
Yang, Yushang [1 ]
Hu, Yang [1 ]
Yuan, Yong [1 ]
Ji, Aifang [2 ]
Chen, Longqi [1 ]
机构
[1] Sichuan Univ, West China Hosp, Dept Thorac Surg, Chengdu 610041, Peoples R China
[2] Changzhi Med Univ, Heping Hosp, 161 Jiefang East St, Changzhi 046000, Peoples R China
关键词
Esophageal squamous cell carcinoma; Raman spectroscopy; Classification; Machine learning; Diagnosis; SPECTRA; CANCER; DIAGNOSIS; IDENTIFICATION; DYSPLASIA;
D O I
10.1016/j.saa.2022.121654
中图分类号
O433 [光谱学];
学科分类号
0703 ; 070302 ;
摘要
Early diagnosis of esophageal squamous cell carcinoma (ESCC), a common malignant tumor with a low overall survival rate due to metastasis and recurrence, is critical for effective treatment and improved prognosis. Raman spectroscopy, an advanced detection technology for esophageal cancer, was developed to improve diagnosis sensitivity, specificity, and accuracy. This study proposed a novel, effective, and noninvasive Raman spectros-copy technique to differentiate and classify ESCC cell lines. Seven ESCC cell lines and tissues of an ESCC patient with staging of T3N1M0 and T3N2M0 at low and high differentiation levels were investigated through Raman spectroscopy. Raman spectral data analysis was performed with four machine learning algorithms, namely principal components analysis (PCA)- linear discriminant analysis (LDA), PCA-eXtreme gradient boosting (XGB), PCA- support vector machine (SVM), and PCA- (LDA, XGB, SVM)-stacked Gradient Boosting Machine (GBM). Four machine learning algorithms were able to classifiy ESCC cell subtypes from normal esophageal cells. The PCA-XGB model achieved an overall predictive accuracy of 85% for classifying ESCC and adjacent tissues. Moreover, an overall predictive accuracy of 90.3% was achieved in distinguishing low differentiation and high differentiation ESCC tissues with the same stage when PCA-LDA, XGM, and SVM models were combined. This study illustrated the Raman spectral traits of ESCC cell lines and esophageal tissues related to clinical patho-logical diagnosis. Future studies should investigate the role of Raman spectral features in ESCC pathogenesis.
引用
收藏
页数:10
相关论文
共 50 条
[21]   Raman spectroscopy, a potential tool for the objective identification and classification of neoplasia in Barrett's oesophagus [J].
Kendall, C ;
Stone, N ;
Shepherd, N ;
Geboes, K ;
Warren, B ;
Bennett, R ;
Barr, H .
JOURNAL OF PATHOLOGY, 2003, 200 (05) :602-609
[22]   Characterization of breast duct epithelia: a Raman spectroscopic study [J].
Kneipp, J ;
Schut, TB ;
Kliffen, M ;
Menke-Pluijmers, M ;
Puppels, G .
VIBRATIONAL SPECTROSCOPY, 2003, 32 (01) :67-74
[23]   A review of surface-enhanced Raman spectroscopy in pathological processes [J].
Kozik, Alexey ;
Pavlova, Marina ;
Petrov, Ilia ;
Bychkov, Vyacheslav ;
Kim, Larissa ;
Dorozhko, Elena ;
Cheng, Chong ;
Rodriguez, Raul D. ;
Sheremet, Evgeniya .
ANALYTICA CHIMICA ACTA, 2021, 1187
[24]   Interaction with adipocytes induces lung adenocarcinoma A549 cell migration and tumor growth [J].
Li, Fan-Fan ;
Zhang, Hang ;
Li, Jing-Jing ;
Cao, Ya-Nan ;
Dong, Xiang ;
Gao, Cong .
MOLECULAR MEDICINE REPORTS, 2018, 18 (02) :1973-1980
[25]   Esophageal cancer: Epidemiology, risk factors and screening [J].
Li, Jiang ;
Xu, Jianguo ;
Zheng, Yadi ;
Gao, Ya ;
He, Siyi ;
Li, He ;
Zou, Kaiyong ;
Li, Ni ;
Tian, Jinhui ;
Chen, Wanqing ;
He, Jie .
CHINESE JOURNAL OF CANCER RESEARCH, 2021, 33 (05) :535-547
[26]   Blood plasma resonance Raman spectroscopy combined with multivariate analysis for esophageal cancer detection [J].
Li, Xianchang ;
Chen, Hongjun ;
Zhang, Shiding ;
Yang, Haijun ;
Gao, Shanshan ;
Xu, Haisheng ;
Wang, Lidong ;
Xu, Ruiping ;
Zhou, Fuyou ;
Hu, Jiming ;
Zhao, Jianhua ;
Zeng, Haishan .
JOURNAL OF BIOPHOTONICS, 2021, 14 (09)
[27]   Accuracy of Raman spectroscopy in discrimination of nasopharyngeal carcinoma from normal samples: a systematic review and meta-analysis [J].
Li, Yuan ;
Su, Sihui ;
Zhang, Yingzhe ;
Liu, Shiyao ;
Jin, Hongyu ;
Zeng, Qianqing ;
Cheng, Lei .
JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2019, 145 (07) :1811-1821
[28]   Epidemiology of Esophageal Cancer in Japan and China [J].
Lin, Yingsong ;
Totsuka, Yukari ;
He, Yutong ;
Kikuchi, Shogo ;
Qiao, Youlin ;
Ueda, Junko ;
Wei, Wenqiang ;
Inoue, Manami ;
Tanaka, Hideo .
JOURNAL OF EPIDEMIOLOGY, 2013, 23 (04) :233-242
[29]   Establishing spectrochemical changes in the natural history of oesophageal adenocarcinoma from tissue Raman mapping analysis [J].
Maitra, Ishaan ;
Morais, Camilo L. M. ;
Lima, Kassio M. G. ;
Ashton, Katherine M. ;
Bury, Danielle ;
Date, Ravindra S. ;
Martin, Francis L. .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2020, 412 (17) :4077-4087
[30]   A New Look into Cancer-A Review on the Contribution of Vibrational Spectroscopy on Early Diagnosis and Surgery Guidance [J].
Mamede, Adriana P. ;
Santos, Ines P. ;
Batista de Carvalho, Ana L. M. ;
Figueiredo, Paulo ;
Silva, Maria C. ;
Tavares, Mariana V. ;
Marques, Maria P. M. ;
Batista de Carvalho, Luis A. E. .
CANCERS, 2021, 13 (21)