Structural basis of metallo-β-lactamase, serine-β-lactamase and penicillin-binding protein inhibition by cyclic boronates

被引:207
作者
Brem, Juergen [1 ]
Cain, Ricky [2 ]
Cahill, Samuel [1 ]
McDonough, Michael A. [1 ]
Clifton, Ian J. [1 ]
Jimenez-Castellanos, Juan-Carlos [3 ]
Avison, Matthew B. [3 ]
Spencer, James [3 ]
Fishwick, Colin W. G. [2 ]
Schofield, Christopher J. [1 ]
机构
[1] Univ Oxford, Dept Chem, 12 Mansfield Rd, Oxford OX1 3TA, England
[2] Univ Leeds, Sch Chem, Leeds LS2 9JT, W Yorkshire, England
[3] Univ Bristol, Sch Cellular & Mol Med, Biomed Sci Bldg, Bristol BS8 1TD, Avon, England
基金
英国工程与自然科学研究理事会; 英国医学研究理事会;
关键词
CRYSTAL-STRUCTURES; RAMA; ACID; COMBINATIONS; HYDROLYSIS; COMPLEXES;
D O I
10.1038/ncomms12406
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
beta-Lactamases enable resistance to almost all beta-lactam antibiotics. Pioneering work revealed that acyclic boronic acids can act as 'transition state analogue' inhibitors of nucleophilic serine enzymes, including serine-beta-lactamases. Here we report biochemical and biophysical analyses revealing that cyclic boronates potently inhibit both nucleophilic serine and zinc-dependent beta-lactamases by a mechanism involving mimicking of the common tetrahedral intermediate. Cyclic boronates also potently inhibit the non-essential penicillin-binding protein PBP 5 by the same mechanism of action. The results open the way for development of dual action inhibitors effective against both serine- and metallo-beta-lactamases, and which could also have antimicrobial activity through inhibition of PBPs.
引用
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页数:8
相关论文
共 42 条
[1]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[2]   Probing substrate binding to the metal binding sites in metallo-β-lactamase L1 during catalysis [J].
Aitha, Mahesh ;
Al-Abdul-Wahid, Sameer ;
Tierney, David L. ;
Crowder, Michael W. .
MEDCHEMCOMM, 2016, 7 (01) :194-201
[3]   CONSTRUCTION AND PROPERTIES OF A FAMILY OF PACYC184-DERIVED CLONING VECTORS COMPATIBLE WITH PBR322 AND ITS DERIVATIVES [J].
BARTOLOME, B ;
JUBETE, Y ;
MARTINEZ, E ;
DELACRUZ, F .
GENE, 1991, 102 (01) :75-78
[4]   Critical Role of Tryptophan 154 for the Activity and Stability of Class D β-Lactamases [J].
Baurin, Stephane ;
Vercheval, Lionel ;
Bouillenne, Fabrice ;
Falzone, Claudia ;
Brans, Alain ;
Jacquamet, Lilian ;
Ferrer, Jean-Luc ;
Sauvage, Eric ;
Dehareng, Dominique ;
Frere, Jean-Marie ;
Charlier, Paulette ;
Galleni, Moreno ;
Kerff, Frederic .
BIOCHEMISTRY, 2009, 48 (47) :11252-11263
[5]   Dramatic broadening of the substrate profile of the Aeromonas hydrophila CphA metallo-β-lactamase by site-directed mutagenesis [J].
Bebrone, C ;
Anne, C ;
De Vriendt, K ;
Devreese, B ;
Rossolini, GM ;
Van Beeumen, J ;
Frère, JM ;
Galleni, M .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (31) :28195-28202
[6]   Structural Basis of Metallo-β-Lactamase Inhibition by Captopril Stereoisomers [J].
Brem, Juergen ;
van Berkel, Sander S. ;
Zollman, David ;
Lee, Sook Y. ;
Gileadi, Opher ;
McHugh, Peter J. ;
Walsh, Timothy R. ;
McDonough, Michael A. ;
Schofield, Christopher J. .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2016, 60 (01) :142-150
[7]   Studying the active-site loop movement of the Sao Paolo metallo-β-lactamase-1 [J].
Brem, Juergen ;
Struwe, Weston B. ;
Rydzik, Anna M. ;
Tarhonskaya, Hanna ;
Pfeffer, Inga ;
Flashman, Emily ;
van Berkel, Sander S. ;
Spencer, James ;
Claridge, Timothy D. W. ;
McDonough, Michael A. ;
Benesch, Justin L. P. ;
Schofield, Christopher J. .
CHEMICAL SCIENCE, 2015, 6 (02) :956-963
[8]  
Brem J, 2014, NAT CHEM, V6, P1084, DOI [10.1038/NCHEM.2110, 10.1038/nchem.2110]
[9]   Analysis of the Functional Contributions of Asn233 in Metallo-β-Lactamase IMP-1 [J].
Brown, Nicholas G. ;
Horton, Lori B. ;
Huang, Wanzhi ;
Vongpunsawad, Sompong ;
Palzkill, Timothy .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2011, 55 (12) :5696-5702
[10]   Updated Functional Classification of β-Lactamases [J].
Bush, Karen ;
Jacoby, George A. .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2010, 54 (03) :969-976