Evaluation of the individual hydrogen bonding energies in N-methylacetamide chains

被引:14
作者
Jiang XiaoNan [1 ]
Wang ChangSheng [1 ]
机构
[1] Liaoning Normal Univ, Sch Chem & Chem Engn, Dalian 116029, Peoples R China
基金
中国国家自然科学基金;
关键词
N-methylacetamide chain; the individual hydrogen bonding energy; hydrogen bond cooperativity; DENSITY-FUNCTIONAL THEORY; PROTEIN-FOLDING MODELS; COOPERATIVITY; AMIDE; MOLECULES; PEPTIDES; PAIRS; FORM; NMR;
D O I
10.1007/s11426-010-4047-3
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The individual hydrogen bonding energies in N-methylacetamide chains were evaluated at the MP2/6-31+G** level including BSSE correction and at the B3LYP/6-311++G(3df,2pd) level including BSSE and van der Weals correction. The calculation results indicate that compared with MP2 results, B3LYP calculations without van der Weals correction underestimate the individual hydrogen bonding energies about 5.4 kJ mol(-1) for both the terminal and central hydrogen bonds, whereas B3LYP calculations with van der Waals correction produce almost the same individual hydrogen bonding energies as MP2 does for those terminal hydrogen bonds, but still underestimate the individual hydrogen bonding energies about 2.5 kJ mol(-1) for the hydrogen bonds near the center. Our calculation results show that the individual hydrogen bonding energy becomes more negative (more attractive) as the chain becomes longer and that the hydrogen bonds close to the interior of the chain are stronger than those near the ends. The weakest individual hydrogen bonding energy is about -29.0 kJ mol(-1) found in the dimer, whereas with the growth of the N-methylacetamide chain the individual hydrogen bonding energy was estimated to be as large as -62.5 kJ mol(-1) found in the N-methylacetamide decamer, showing that there is a significant hydrogen bond cooperative effect in N-methylacetamide chains. The natural bond orbital analysis indicates that a stronger hydrogen bond corresponds to a larger positive charge for the H atom and a larger negative charge for the O atom in the N-H center dot center dot center dot O=C bond, corresponds to a stronger second-order stabilization energy between the oxygen lone pair and the N-H antibonding orbital, and corresponds to more charge transfer between the hydrogen bonded donor and acceptor molecules.
引用
收藏
页码:1754 / 1761
页数:8
相关论文
共 50 条
[21]   Vibrational Relaxation and Energy Migration of N-Methylacetamide in Water: The Role of Non bonded Interactions [J].
Cazade, Pierre-Andre ;
Hedin, Florent ;
Xu, Zhen-Hao ;
Meuwly, Markus .
JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (07) :3112-3122
[22]   Quantum and Classical Vibrational Relaxation Dynamics of N-Methylacetamide on Ab Initio Potential Energy Surfaces [J].
Fujisaki, Hiroshi ;
Yagi, Kiyoshi ;
Straub, John E. ;
Stock, Gerhard .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2009, 109 (10) :2047-2057
[23]   Probing the replacement of water by dimethyl sulfoxide in the hydration shell of N-methylacetamide by FTIR-spectroscopy [J].
Schweitzer-Stenner, Reinhard ;
Carson, Heather ;
DiGuiseppi, David .
VIBRATIONAL SPECTROSCOPY, 2017, 92 :251-258
[24]   The mechanism of alkaline hydrolysis of amides: a comparative computational and experimental study of the hydrolysis of N-methylacetamide, N-methylbenzamide, and acetanilide [J].
Cheshmedzhieva, Diana ;
Ilieva, Sonia ;
Hadjieva, Boriana ;
Galabov, Boris .
JOURNAL OF PHYSICAL ORGANIC CHEMISTRY, 2009, 22 (06) :619-631
[25]   A Scheme for Rapid Prediction of Cooperativity in Hydrogen Bond Chains of Formamides, Acetamides, and N-Methylformamides [J].
Jiang, Xiao-Nan ;
Sun, Chang-Liang ;
Wang, Chang-Sheng .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2010, 31 (07) :1410-1420
[26]   Redistribution of carbonyl stretch mode energy in isolated and solvated N-methylacetamide: Kinetic energy spectral density analyses [J].
Jeon, Jonggu ;
Cho, Minhaeng .
JOURNAL OF CHEMICAL PHYSICS, 2011, 135 (21)
[27]   DFT-Calculated IR Spectrum Amide I, II, and III Band Contributions of N-Methylacetamide Fine Components [J].
Ji, Yan ;
Yang, Xiaoliang ;
Ji, Zhi ;
Zhu, Linhui ;
Ma, Nana ;
Chen, Dejun ;
Jia, Xianbin ;
Tang, Junming ;
Cao, Yilin .
ACS OMEGA, 2020, 5 (15) :8572-8578
[28]   Electrostatic origin of the cooperative effect on the C=O bond lengths and the amide I vibrational frequencies of the N-methylacetamide oligomers [J].
Torii, H .
JOURNAL OF MOLECULAR STRUCTURE, 2005, 735 :21-26
[29]   A systematic evaluation of different hydrogen bonding patterns in unsymmetrical 1,n′-disubstituted ferrocenoyl peptides [J].
Kirin, Srecko I. ;
Schatzschneider, Ulrich ;
Koester, S. David ;
Siebler, Daniel ;
Metzler-Nolte, Nils .
INORGANICA CHIMICA ACTA, 2009, 362 (03) :894-906
[30]   Density functional theory calculations of hydrogen bonding energies of drug molecules [J].
Bondesson, Laban ;
Mikkelsen, Kurt V. ;
Luo, Yi ;
Garberg, Per ;
Agren, Hans .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2006, 776 (1-3) :61-68