Characterization of the complete chloroplast genome of Ajuga forrestii (Lamiaceae), a medicinal plant in southwest of China

被引：7

作者：

Tao, Ai-En ^{[1
,2
]}

Zhao, Fei-Ya ^{[1
,2
]}

Xia, Cong-Long ^{[1
,3
]}

机构：

[1] Dali Univ, Coll Pharm & Chem, Dali, Peoples R China

[2] Yunnan Univ, Tourism & Culture Coll, Sch Med, Lijiang, Peoples R China

[3] Yunnan Prov Higher Educ Inst Dev Yunnan Daodi Med, Key Lab, Kunming, Yunnan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期

关键词：

Ajuga forrestii; chloroplast; Illumina sequencing; phylogeny; ETHNOPHARMACOLOGY; BENTH;

D O I：

10.1080/23802359.2019.1689193

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Ajuga forrestii is a medicinal plant commonly used in southwest of China. In this study, we sequenced the complete chloroplast (cp) genome sequence of A. forrestii to investigate its phylogenetic relationship in the family Lamiaceae. The chloroplast genome of A. forrestii was 150,492 bp in length with 38.3% overall GC content, including a large single copy (LSC) region of 82,148 bp, a small single copy (SSC) region of 17,160 bp and a pair of inverted repeats (IRs) of 25,592 bp. The cp genome contained 112 genes, including 79 protein coding genes, 29 tRNA genes, and 4 rRNA genes. The phylogenetic analysis indicated Ajuga was closely related to Scutellaria.

引用

页码：3969 / 3970

页数：2

共 18 条

[1] Trimmomatic: a flexible trimmer for Illumina sequence data [J].

Bolger, Anthony M. ;

Lohse, Marc ;

Usadel, Bjoern .

BIOINFORMATICS, 2014, 30 (15) :2114-2120

[2] Phytochemical, cytotoxic and chemotaxonomic study on Ajuga forrestii Diels (Labiatae) [J].

Chen, Tong ;

Diao, Qing-Yan ;

Yu, Hai-Zhou ;

Jiao, Chun-Li ;

Ruan, Jian .

NATURAL PRODUCT RESEARCH, 2018, 32 (08) :977-981

[3] Ajuga remota Benth.: From ethnopharmacology to phytomedical perspective in the treatment of malaria [J].

Cocquyt, K. ;

Cos, P. ;

Herdewijn, P. ;

Maes, L. ;

Van den Steen, P. E. ;

Laekeman, G. .

PHYTOMEDICINE, 2011, 18 (14) :1229-1237

[4]

Doyle J. J., 1987, Phytochem Bull, V19, P11, DOI [10.1016/0031-9422%2880%2985004-7, DOI 10.2307/4119796]

[5] OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes [J].

Greiner, Stephan ;

Lehwark, Pascal ;

Bock, Ralph .

NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W59-W64

[6]

Israili ZH, 2009, PAK J PHARM SCI, V22, P425

[7]

Jin J J., 2019, GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes, DOI [DOI 10.1186/S13059-020-02154-5, 10.1101/256479, DOI 10.1101/256479]

[8] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[9] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data [J].

Kearse, Matthew ;

Moir, Richard ;

Wilson, Amy ;

Stones-Havas, Steven ;

Cheung, Matthew ;

Sturrock, Shane ;

Buxton, Simon ;

Cooper, Alex ;

Markowitz, Sidney ;

Duran, Chris ;

Thierer, Tobias ;

Ashton, Bruce ;

Meintjes, Peter ;

Drummond, Alexei .

BIOINFORMATICS, 2012, 28 (12) :1647-1649

[10]

Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]

← 1 2 →