Docking and QSAR analysis of tetracyclic oxindole derivatives as α-glucosidase inhibitors

The alpha-glucosidase inhibitors are considered as important agents in drug discovery against diabetes mellitus. Molecular docking and quantitative structure-activity relationship (QSAR) were performed based on a series of tetracyclic oxindole derivatives to elucidate key structural properties affecting inhibitory activity and support the design of new alpha-glucosidase inhibitors. The molecular docking results demonstrate that at least two hydrogen bonds between Thr681 and Arg676 residues and the oxygen atoms in amid groups have an important role in the optimum binding of inhibitors. In addition, the sum of polar contacts of Arg699, Arg670, Glu792 and Glu301 residues with the alpha-glucosidase inhibitors have more than one third of total binding free energy. The docked conformations of the inhibitors with the best binding free energy were used to construct QSAR models. As a primary survey and a graphical comparing tool, the partial least squares-discriminant analysis (PLS-DA) technique was successfully employed to classify active and inactive inhibitors. The validated QSAR analysis were performed through genetic algorithm-partial least squares (GA-PLS) and support vector machine (SVM) techniques. The QSAR model reveals that important features of J3D, Mor26 u and HOMA have a high predictive capability (R-p(2) = 0.837, Q(LOO)(2) = 0.871, R-LSO(2) = 0.790 and r(m)(2) = 0.758) using GA-PLS/SVM strategy. Generally, the suggested QSAR analysis based on classification, docking and GA-PLS/SVM strategy may help suggest chemical scaffold to design novel oxindole derivatives as alpha-glucosidase inhibitors.