The effects of rapid desiccation on estimates of plant genome size

被引:38
作者
Bainard, Jillian D. [1 ]
Husband, Brian C. [1 ]
Baldwin, Sarah J. [1 ]
Fazekas, Aron J. [1 ]
Gregory, T. Ryan [1 ]
Newmaster, Steven G. [1 ]
Kron, Paul [1 ]
机构
[1] Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
DNA content; dried tissue; flow cytometry; polyploidy; silica gel; NUCLEAR-DNA CONTENT; PLOIDY LEVEL VARIABILITY; FLOW-CYTOMETRY; INTRASPECIFIC VARIATION; FESCUES FESTUCA; HEXAPLOID CYTOTYPES; SEX DETERMINATION; HABITAT; POACEAE; FIELD;
D O I
10.1007/s10577-011-9232-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Flow cytometry has become the dominant method for estimating nuclear DNA content in plants, either for ploidy determination or quantification of absolute genome size. Current best practices for flow cytometry involve the analysis of fresh tissue, however, this imposes significant limitations on the geographic scope and taxonomic diversity of plants that can be included in large-scale genome size studies. Dried tissue has been used increasingly in recent years, but largely in the context of ploidy analysis. Here we test rapid tissue drying with silica gel as a method for use in genome size studies, potentially enabling broader geographic sampling of plants when fresh tissue collection is not feasible. Our results indicate that rapid drying introduces comparatively minor error (<10%), which is similar to the error introduced by other common methodological variations such as instrument. Additionally, the relative effect of drying on genome size and data quality varied between species and buffers. Tissue desiccation provides a promising approach for expanding our knowledge of plant genome size diversity.
引用
收藏
页码:825 / 842
页数:18
相关论文
共 50 条
[1]  
Arumuganathan K., 1991, PLANT MOL BIOL REP, V9, P229, DOI [DOI 10.1007/BF02672073, 10.1007/BF02672073]
[2]   Methodology Significantly Affects Genome Size Estimates: Quantitative Evidence Using Bryophytes [J].
Bainard, Jillian D. ;
Fazekas, Aron J. ;
Newmaster, Steven G. .
CYTOMETRY PART A, 2010, 77A (08) :725-732
[3]   Distribution and diversity of cytotypes in Dianthus broteri as evidenced by genome size variations [J].
Balao, Francisco ;
Casimiro-Soriguer, Ramon ;
Talavera, Maria ;
Herrera, Javier ;
Talavera, Salvador .
ANNALS OF BOTANY, 2009, 104 (05) :965-973
[4]   Genome size in Allium:: In quest of reproducible data [J].
Baranyi, M ;
Greilhuber, J .
ANNALS OF BOTANY, 1999, 83 (06) :687-695
[5]   Plant genome size research: A field in focus [J].
Bennett, MD ;
Leitch, IJ .
ANNALS OF BOTANY, 2005, 95 (01) :1-6
[6]   NUCLEAR-DNA AMOUNTS IN ANGIOSPERMS [J].
BENNETT, MD ;
SMITH, JB .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1976, 274 (933) :227-274
[7]   NUCLEAR-DNA AMOUNTS IN ANGIOSPERMS [J].
BENNETT, MD ;
LEITCH, IJ .
ANNALS OF BOTANY, 1995, 76 (02) :113-176
[8]  
Bennett Michael D., 2005, P89, DOI 10.1016/B978-012301463-4/50004-8
[9]   SILICA-GEL - AN IDEAL MATERIAL FOR FIELD PRESERVATION OF LEAF SAMPLES FOR DNA STUDIES [J].
CHASE, MW ;
HILLS, HH .
TAXON, 1991, 40 (02) :215-220
[10]   Genome size variation and morphological differentiation within Ranunculus parnassifolius group (Ranunculaceae) from calcareous screes in the Northwest of Spain [J].
Cires, Eduardo ;
Cuesta, Candela ;
Peredo, Elena L. ;
Angeles Revilla, Maria ;
Fernandez Prieto, Jose Antonio .
PLANT SYSTEMATICS AND EVOLUTION, 2009, 281 (1-4) :193-208