Whole-genome sequencing in the prediction of antimicrobial resistance

被引:18
|
作者
Chan, Kok-Gan [1 ]
机构
[1] Univ Malaya, Inst Biol Sci, Div Genet & Mol Biol, Fac Sci, Kuala Lumpur 50603, Malaysia
关键词
Next generation sequencing; bioinformatics; metagenome; multidrug-resistant bacteria; single-cell transcriptome; ANTIBIOTIC-RESISTANCE; ESCHERICHIA-COLI; SURVEILLANCE; GENES;
D O I
10.1080/14787210.2016.1193005
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
引用
收藏
页码:617 / 619
页数:3
相关论文
共 50 条
  • [31] Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors
    Heinz, Eva
    Brindle, Richard
    Morgan-McCalla, Andrina
    Peters, Keisha
    Thomson, Nicholas R.
    MICROBIAL GENOMICS, 2019, 5 (05):
  • [32] Staphylococcus epidermidis joint isolates: Whole-genome sequencing demonstrates evidence of hospital transmission and common antimicrobial resistance
    Simon, Samantha J.
    Sater, Mohamad
    Herriott, Ian
    Huntley, Miriam
    Briars, Emma
    Hollenbeck, Brian L.
    INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY, 2024, 45 (02) : 150 - 156
  • [33] Laboratory Evolution Assays and Whole-Genome Sequencing for the Development and Safety Evaluation of Lactobacillus plantarum With Stable Resistance to Gentamicin
    Dong, Yushan
    Zhang, Fuxin
    Wang, Bini
    Gao, Jiayuan
    Zhang, Jiangtao
    Shao, Yuyu
    FRONTIERS IN MICROBIOLOGY, 2019, 10
  • [34] Whole-Genome Sequencing for National Surveillance of Shigella flexneri
    Chattaway, Marie A.
    Greig, David R.
    Gentle, Amy
    Hartman, Hassan B.
    Dallman, Timothy J.
    Jenkins, Claire
    FRONTIERS IN MICROBIOLOGY, 2017, 8
  • [35] Whole-genome sequencing for surveillance of tuberculosis drug resistance and determination of resistance level in China
    Liu, Dongxin
    Huang, Fei
    Zhang, Guoliang
    He, Wencong
    Ou, Xichao
    He, Ping
    Zhao, Bing
    Zhu, Baoli
    Liu, Fei
    Li, Zhiyuan
    Liu, Chunfa
    Xia, Hui
    Wang, Shengfen
    Zhou, Yang
    Walker, Timothy M.
    Liu, Lei
    Crook, Derrick W.
    Zhao, Yanlin
    CLINICAL MICROBIOLOGY AND INFECTION, 2022, 28 (05) : 731.e9 - 731.e15
  • [36] Strengths and caveats of identifying resistance genes from whole genome sequencing data
    Forde, Brian M.
    De Oliveira, David M. P.
    Falconer, Caitlin
    Graves, Bianca
    Harris, Patrick N. A.
    EXPERT REVIEW OF ANTI-INFECTIVE THERAPY, 2022, 20 (04) : 533 - 547
  • [37] Whole Genome Sequencing of Vibrio alginolyticus: Insights into Virulence and Antimicrobial Resistance
    Shahansha, Azhar T. S.
    Pradeep, M. A.
    Sharma, Krupesha S. R.
    Sanil, N. K.
    FISHERY TECHNOLOGY, 2024, 61 (01): : 53 - 62
  • [38] Whole-genome sequencing reveals the mechanisms for evolution of streptomycin resistance in Lactobacillus plantarum
    Zhang, Fuxin
    Gao, Jiayuan
    Wang, Bini
    Huo, Dongxue
    Wang, Zhaoxia
    Zhang, Jiachao
    Shao, Yuyu
    JOURNAL OF DAIRY SCIENCE, 2018, 101 (04) : 2867 - 2874
  • [39] Whole-genome haplotyping by dilution, amplification, and sequencing
    Kaper, Fiona
    Swamy, Sajani
    Klotzle, Brandy
    Munchel, Sarah
    Cottrell, Joseph
    Bibikova, Marina
    Chuang, Han-Yu
    Kruglyak, Semyon
    Ronaghi, Mostafa
    Eberle, Michael A.
    Fan, Jian-Bing
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (14) : 5552 - 5557
  • [40] Whole genome sequencing (WGS) fails to detect antimicrobial resistance (AMR) from heteroresistant subpopulation of Salmonella enterica
    Zwe, Ye Htut
    Chin, Seow Fong
    Kohli, Gurjeet Singh
    Aung, Kyaw Thu
    Yang, Liang
    Yuk, Hyun-Gyun
    FOOD MICROBIOLOGY, 2020, 91