Effects of x-ray free-electron laser pulse intensity on the Mn Kβ1,3 x-ray emission spectrum in photosystem II-A case study for metalloprotein crystals and solutions

被引:13
作者
Fransson, Thomas [1 ]
Alonso-Mori, Roberto [2 ]
Chatterjee, Ruchira [3 ]
Cheah, Mun Hon [4 ]
Ibrahim, Mohamed [5 ]
Hussein, Rana [5 ]
Zhang, Miao [5 ]
Fuller, Franklin [2 ]
Gul, Sheraz [3 ]
Kim, In-Sik [3 ]
Simon, Philipp S. [3 ]
Bogacz, Isabel [3 ]
Makita, Hiroki [3 ]
de Lichtenberg, Casper [4 ,6 ,7 ]
Song, Sanghoon [2 ]
Batyuk, Alexander [2 ]
Sokaras, Dimosthenis [8 ]
Massad, Ramzi [3 ]
Doyle, Margaret [3 ]
Britz, Alexander [2 ,9 ]
Weninger, Clemens [10 ]
Zouni, Athina [5 ]
Messinger, Johannes [4 ,6 ]
Yachandra, Vittal K. [3 ]
Yano, Junko [3 ]
Kern, Jan [3 ]
Bergmann, Uwe [11 ]
机构
[1] KTH Royal Inst Technol, Dept Theoret Chem & Biol, Stockholm, Sweden
[2] SLAC Natl Accelerator Lab, Linac Coherent Light Source, Menlo Pk, CA 94025 USA
[3] Lawrence Berkeley Natl Lab, Mol Biophys & Integrated Bioimaging Div, Berkeley, CA 94720 USA
[4] Uppsala Univ, Dept Chem, Angstrom Lab Mol Biomimet, SE-75120 Uppsala, Sweden
[5] Humboldt Univ, Dept Biol, D-10099 Berlin, Germany
[6] Umea Univ, Dept Chem, SE-90187 Umea, Sweden
[7] Univ Copenhagen, Sect Biomol Sci, Dept Biol, DK-2200 Copenhagen N, Denmark
[8] SLAC Natl Accelerator Lab, Stanford Synchrotron Radiat Lightsource, Menlo Pk, CA 94025 USA
[9] SLAC Natl Accelerator Lab, Stanford PULSE Inst, Menlo Pk, CA 94025 USA
[10] Lund Univ, MAX Lab 4, Lund, Sweden
[11] Univ Wisconsin, Dept Phys, Madison, WI 53706 USA
来源
STRUCTURAL DYNAMICS-US | 2021年 / 8卷 / 06期
基金
瑞典研究理事会;
关键词
CENTERED OXIDATION; S-3; TRANSITION; MN4CA COMPLEX; SPECTROSCOPY; WATER; PHOTOSYNTHESIS; REFLECTIONS; DIFFRACTION; MECHANISM; DYNAMICS;
D O I
10.1063/4.0000130
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In the last ten years, x-ray free-electron lasers (XFELs) have been successfully employed to characterize metalloproteins at room temperature using various techniques including x-ray diffraction, scattering, and spectroscopy. The approach has been to outrun the radiation damage by using femtosecond (fs) x-ray pulses. An example of an important and damage sensitive active metal center is the Mn4CaO5 cluster in photosystem II (PS II), the catalytic site of photosynthetic water oxidation. The combination of serial femtosecond x-ray crystallography and K beta x-ray emission spectroscopy (XES) has proven to be a powerful multimodal approach for simultaneously probing the overall protein structure and the electronic state of the Mn4CaO5 cluster throughout the catalytic (Kok) cycle. As the observed spectral changes in the Mn4CaO5 cluster are very subtle, it is critical to consider the potential effects of the intense XFEL pulses on the K beta XES signal. We report here a systematic study of the effects of XFEL peak power, beam focus, and dose on the Mn K beta(1,3) XES spectra in PS II over a wide range of pulse parameters collected over seven different experimental runs using both microcrystal and solution PS II samples. Our findings show that for beam intensities ranging from similar to 5 x 10(15) to 5 x 10(17) W/cm(2) at a pulse length of similar to 35 fs, the spectral effects are small compared to those observed between S-states in the Kok cycle. Our results provide a benchmark for other XFEL-based XES studies on metalloproteins, confirming the viability of this approach. (c) 2021 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/)
引用
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页数:13
相关论文
共 70 条
[1]   Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs [J].
Alonso-Mori, R. ;
Asa, K. ;
Bergmann, U. ;
Brewster, A. S. ;
Chatterjee, R. ;
Cooper, J. K. ;
Frei, H. M. ;
Fuller, F. D. ;
Goggins, E. ;
Gul, S. ;
Fukuzawa, H. ;
Iablonskyi, D. ;
Ibrahim, M. ;
Katayama, T. ;
Kroll, T. ;
Kumagai, Y. ;
McClure, B. A. ;
Messinger, J. ;
Motomura, K. ;
Nagaya, K. ;
Nishiyama, T. ;
Saracini, C. ;
Sato, Y. ;
Sauter, N. K. ;
Sokaras, D. ;
Takanashi, T. ;
Togashi, T. ;
Ueda, K. ;
Weare, W. W. ;
Weng, T-C ;
Yabashi, M. ;
Yachandra, V. K. ;
Young, I. D. ;
Zouni, A. ;
Kern, J. F. ;
Yano, J. .
FARADAY DISCUSSIONS, 2016, 194 :621-638
[2]   Femtosecond electronic structure response to high intensity XFEL pulses probed by iron X-ray emission spectroscopy [J].
Alonso-Mori, Roberto ;
Sokaras, Dimosthenis ;
Cammarata, Marco ;
Ding, Yuantao ;
Feng, Yiping ;
Fritz, David ;
Gaffney, Kelly J. ;
Hastings, Jerome ;
Kao, Chi-Chang ;
Lemke, Henrik T. ;
Maxwell, Timothy ;
Robert, Aymeric ;
Schropp, Andreas ;
Seiboth, Frank ;
Sikorski, Marcin ;
Song, Sanghoon ;
Weng, Tsu-Chien ;
Zhang, Wenkai ;
Glenzer, Siegfried ;
Bergmann, Uwe ;
Zhu, Diling .
SCIENTIFIC REPORTS, 2020, 10 (01)
[3]   Photon-in photon-out hard X-ray spectroscopy at the Linac Coherent Light Source [J].
Alonso-Mori, Roberto ;
Sokaras, Dimosthenis ;
Zhu, Diling ;
Kroll, Thomas ;
Chollet, Mathieu ;
Feng, Yiping ;
Glownia, James M. ;
Kern, Jan ;
Lemke, Henrik T. ;
Nordlund, Dennis ;
Robert, Aymeric ;
Sikorski, Marcin ;
Song, Sanghoon ;
Weng, Tsu-Chien ;
Bergmann, Uwe .
JOURNAL OF SYNCHROTRON RADIATION, 2015, 22 :612-620
[4]   Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode [J].
Alonso-Mori, Roberto ;
Kern, Jan ;
Gildea, Richard J. ;
Sokaras, Dimosthenis ;
Weng, Tsu-Chien ;
Lassalle-Kaiser, Benedikt ;
Rosalie Tran ;
Hattne, Johan ;
Laksmono, Hartawan ;
Hellmich, Julia ;
Gloeckner, Carina ;
Echols, Nathaniel ;
Sierra, Raymond G. ;
Schafer, Donald W. ;
Sellberg, Jonas ;
Kenney, Christopher ;
Herbst, Ryan ;
Pines, Jack ;
Hart, Philip ;
Herrmann, Sven ;
Grosse-Kunstleve, Ralf W. ;
Latimer, Matthew J. ;
Fry, Alan R. ;
Messerschmidt, Marc M. ;
Miahnahri, Alan ;
Seibert, M. Marvin ;
Zwart, Petrus H. ;
White, William E. ;
Adams, Paul D. ;
Bogan, Michael J. ;
Boutet, Sebastien ;
Williams, Garth J. ;
Zouni, Athina ;
Messinger, Johannes ;
Glatzel, Pieter ;
Sauter, Nicholas K. ;
Yachandra, Vittal K. ;
Yano, Junko ;
Bergmann, Uwe .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (47) :19103-19107
[5]   A multi-crystal wavelength dispersive x-ray spectrometer [J].
Alonso-Mori, Roberto ;
Kern, Jan ;
Sokaras, Dimosthenis ;
Weng, Tsu-Chien ;
Nordlund, Dennis ;
Tran, Rosalie ;
Montanez, Paul ;
Delor, James ;
Yachandra, Vittal K. ;
Yano, Junko ;
Bergmann, Uwe .
REVIEW OF SCIENTIFIC INSTRUMENTS, 2012, 83 (07)
[6]  
Baumbaugh A, 2011, IEEE NUCL SCI CONF R, P660, DOI 10.1109/NSSMIC.2011.6153986
[7]   Characterization of the Mn oxidation states in photosystem II by Kβ X-ray fluorescence spectroscopy [J].
Bergmann, U ;
Grush, MM ;
Horne, CR ;
DeMarois, P ;
Penner-Hahn, JE ;
Yocum, CF ;
Wright, DW ;
Dubé, CE ;
Armstrong, WH ;
Christou, G ;
Eppley, HJ ;
Cramer, SP .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (42) :8350-8352
[8]  
Bergmann U., 2017, XRAY FREE ELECT LASE
[9]   Using X-ray free-electron lasers for spectroscopy of molecular catalysts and metalloenzymes [J].
Bergmann, Uwe ;
Kern, Jan ;
Schoenlein, Robert W. ;
Wernet, Philippe ;
Yachandra, Vittal K. ;
Yano, Junko .
NATURE REVIEWS PHYSICS, 2021, 3 (04) :264-282
[10]   X-ray emission spectroscopy [J].
Bergmann, Uwe ;
Glatzel, Pieter .
PHOTOSYNTHESIS RESEARCH, 2009, 102 (2-3) :255-266