Complete Genome Sequence of Caulobacter sp. Strain 56, Obtained Using Oxford Nanopore and Illumina Sequencing

被引：0

作者：

Zhang, Cuiyang ^{[1
]}

Huang, Jun ^{[1
]}

Ouyang, Wei ^{[1
]}

Li, Yongmei ^{[1
]}

Tang, Ying ^{[1
]}

Guo, Zhaohui ^{[1
]}

Lei, Ping ^{[1
]}

Liu, Qingshu ^{[1
]}

机构：

[1] Hunan Inst Microbiol, Changsha, Hunan, Peoples R China

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2021年 / 10卷 / 39期

基金：

中国国家自然科学基金;

关键词：

SP NOV;

D O I：

10.1128/MRA.00680-21

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

We report the complete genome sequence of Caulobacter sp. strain S6, generated from Oxford Nanopore and Illumina sequencing. The assembled genome com prises a chromosome with a length of 5.5 Mb and a plasmid of 96,014 bp.

引用

页数：2

共 13 条

[1] SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data [J].

Chen, Yuxin ;

Chen, Yongsheng ;

Shi, Chunmei ;

Huang, Zhibo ;

Zhang, Yong ;

Li, Shengkang ;

Li, Yan ;

Ye, Jia ;

Yu, Chang ;

Li, Zhuo ;

Zhang, Xiuqing ;

Wang, Jian ;

Yang, Huanming ;

Fang, Lin ;

Chen, Qiang .

GIGASCIENCE, 2017, 7 (01) :1-6

[2] NanoPack: visualizing and processing long-read sequencing data [J].

De Coster, Wouter ;

D'Hert, Svenn ;

Schultz, Darrin T. ;

Cruts, Marc ;

Van Broeckhoven, Christine .

BIOINFORMATICS, 2018, 34 (15) :2666-2669

[3] Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes [J].

Frank, Jeremy A. ;

Reich, Claudia I. ;

Sharma, Shobha ;

Weisbaum, Jon S. ;

Wilson, Brenda A. ;

Olsen, Gary J. .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (08) :2461-2470

[4] Caulobacter profunda sp nova, isolated from deep freshwater sediment [J].

Jin, Long ;

La, Hyun-Joon ;

Lee, Hyung-Gwan ;

Lee, Jay Jung ;

Lee, Sanghyup ;

Ahn, Chi-Yong ;

Oh, Hee-Mock .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :762-767

[5] Caulobacter daechungensis sp nov., a stalked bacterium isolated from a eutrophic reservoir [J].

Jin, Long ;

Lee, Hyung-Gwan ;

Kim, Hee-Sik ;

Ahn, Chi-Yong ;

Oh, Hee-Mock .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :2559-2564

[6] Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes [J].

Kim, Mincheol ;

Oh, Hyun-Seok ;

Park, Sang-Cheol ;

Chun, Jongsik .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :346-351

[7] Novel isolates double the number of chemotrophic species and allow the first description of higher taxa in Acidobacteria subdivision 4 [J].

Pascual, Javier ;

Wuest, Pia K. ;

Geppert, Alicia ;

Foesel, Baerbel U. ;

Huber, Katharina J. ;

Overmann, Joerg .

SYSTEMATIC AND APPLIED MICROBIOLOGY, 2015, 38 (08) :534-544

[8] BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files [J].

Payne, Alexander ;

Holmes, Nadine ;

Rakyan, Vardhman ;

Loose, Matthew .

BIOINFORMATICS, 2019, 35 (13) :2193-2198

[9]

Sambrook J., 2001, Molecular Cloning: A Laboratory Manual, V3rd edn.

[10] Caulobacter rhizosphaerae sp nov., a stalked bacterium isolated from rhizosphere soil [J].

Sun, Le-Ni ;

Yang, En-Dong ;

Hou, Xue-Ting ;

Wei, Jie-Chao ;

Yuan, Zhuo-Xin ;

Wang, Wei-Yun .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (06) :1771-1776

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