Characterization of the complete mitochondrial genome of the orange swift, Triodia sylvina

被引：0

作者：

Li, Chao ^{[1
]}

Li, Lili ^{[2
]}

Lu, Zengbin ^{[3
]}

Sun, Yixin ^{[4
]}

Liu, Li ^{[4
]}

Dong, Song ^{[4
]}

Men, Xingyuan ^{[2
]}

机构：

[1] Ocean Univ China, Coll Marine Life Sci, Qingdao, Peoples R China

[2] Shandong Acad Agr Sci, Inst Plant Protect, Jinan, Shandong, Peoples R China

[3] Shandong Acad Agr Sci, Maize Res Inst, Jinan, Shandong, Peoples R China

[4] Shandong Agr Univ, Coll Plant Protect, Tai An, Shandong, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 02期

关键词：

Triodia sylvina; mitochondrial genome; assembly; phylogeny;

D O I：

10.1080/23802359.2018.1467223

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this study, the complete mitochondrial genome of orange swift, Triodia sylvina, was recovered through Illumina sequencing data. This complete mitochondrial genome of T. sylvina is 15,040 bp in length and has a base composition of A (41.0%), T (41.2%), C (10.4%), G (7.5%), demonstrating an extreme bias of high AT content (82.2%). The mitochondrial genome contains a typically conserved structure among moth mitogenomes, encoding 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (12S rRNA and 16S rRNA) genes and a control region (D-loop region). Seven PCGs were located on the H-strand, others were located on the L-strand. ATP8 gene and ATP6 gene were overlapped by 6 bp. ND4 gene and ND4L gene were overlapped by 9 bp. The whole mt genome of T. sylvina and other moth and butterfly mitogenomes (100 species, in total) were used for phylogenetic analysis. The result indicated T. sylvina represents a distinct genus, which separated far from genus Hepialus.

引用

页码：533 / 535

页数：3

共 8 条

[1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[2] HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching [J].

Bi, Guiqi ;

Mao, Yunxiang ;

Xing, Qikun ;

Cao, Min .

GENOMICS, 2018, 110 (01) :18-22

[3] The deep conservation of the Lepidoptera Z chromosome suggests a non-canonical origin of the W [J].

Fraisse, Christelle ;

Picard, Marion A. L. ;

Vicoso, Beatriz .

NATURE COMMUNICATIONS, 2017, 8

[4] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].

Hahn, Christoph ;

Bachmann, Lutz ;

Chevreux, Bastien .

NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129

[5] PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating [J].

Lartillot, Nicolas ;

Lepage, Thomas ;

Blanquart, Samuel .

BIOINFORMATICS, 2009, 25 (17) :2286-2288

[6] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence [J].

Lowe, TM ;

Eddy, SR .

NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :955-964

[7] Unipro UGENE: a unified bioinformatics toolkit [J].

Okonechnikov, Konstantin ;

Golosova, Olga ;

Fursov, Mikhail .

BIOINFORMATICS, 2012, 28 (08) :1166-1167

[8] NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data [J].

Patel, Ravi K. ;

Jain, Mukesh .

PLOS ONE, 2012, 7 (02)

← 1 →