TANH Spline Interpolation for Analytical Modelling of BK Ion Channels in Smooth Muscle

被引:0
|
作者
Gupta, Suranjana [1 ]
Manchanda, Rohit [1 ]
机构
[1] Indian Inst Technol, Dept Biosci & Bioengn, Bombay 400076, Maharashtra, India
来源
ASIA MODELLING SYMPOSIUM 2014 (AMS 2014) | 2014年
关键词
interpolation; hyperbolic tangent; slope factor; BK ion channel; smooth muscle; urinary bladder; ADRENAL CHROMAFFIN CELLS; POTASSIUM CHANNEL; BLADDER; CA2+;
D O I
10.1109/AMS.2014.25
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
Ion channels are molecular entities that are responsible for electrical signal generation in nerve, muscle and other cells. The paper discusses the use of tangent hyperbolic functions (TANH) in the modelling of the Big Conductance Potassium (BK) ion channel, especially for the smooth muscle of the urinary bladder. Ion channels are often modelled using the Hodgkin-Huxley formalism, in which equations governing the dependencies of various state parameters on cellular variables are derived from experimental data. When there is sufficient experimental data, formulating equations that replicate the trend becomes relatively easy. However, where the data for these dependencies is sparse, usual approaches fail. Here, we describe a TANH spline interpolation technique as an efficient means of fitting sparse data. TANH is used to "braid" functions in two adjacent regions and is done, unlike with splines, in a way such that a single function operates over the whole region. The resultant function is whole range, continuous and differentiable to any arbitrary order. We have demonstrated the application of this technique in modelling the parameter "slope factor" for the BK channel of mammalian smooth muscle. We show that, by the use of this technique, BK channel current outputs thus generated, faithfully replicate physiologically recorded BK currents from the detrusor smooth muscles of guinea-pig bladder. We propose this method as one of the general application in modelling ion channels constrained by sparse experimental data.
引用
收藏
页码:71 / 76
页数:6
相关论文
共 50 条
  • [21] Activating BK channels ameliorates vascular smooth muscle calcification through Akt signaling
    Feng-ling Ning
    Jie Tao
    Dan-dan Li
    Lu-lu Tian
    Meng-ling Wang
    Svetlana Reilly
    Cheng Liu
    Hui Cai
    Hong Xin
    Xue-mei Zhang
    Acta Pharmacologica Sinica, 2022, 43 : 624 - 633
  • [22] Bacterial endotoxin alters kinetics of BK channels in rat cerebrovascular smooth muscle cells
    Hoang, L
    Mathers, DA
    BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 1998, 1369 (02): : 335 - 345
  • [23] Structural requirements of the steroid molecule for cholesterol inhibition of arterial smooth muscle BK channels
    Bukiya, Anna N.
    Asuncion-Chin, Maria T.
    Dopico, Alejandro M.
    HYPERTENSION, 2008, 52 (04) : E87 - E87
  • [24] Essential role for smooth muscle BK channels in alcohol-induced cerebrovascular constriction
    Liu, PC
    Xi, Q
    Ahmed, A
    Jaggar, JH
    Dopico, AM
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (52) : 18217 - 18222
  • [25] Regulation of urinary bladder smooth muscle contractions by ryanodine receptors and BK and SK channels
    Herrera, GM
    Heppner, TJ
    Nelson, MT
    AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY, 2000, 279 (01) : R60 - R68
  • [26] Activating BK channels ameliorates vascular smooth muscle calcification through Akt signaling
    Ning, Feng-ling
    Tao, Jie
    Li, Dan-dan
    Tian, Lu-lu
    Wang, Meng-ling
    Reilly, Svetlana
    Liu, Cheng
    Cai, Hui
    Xin, Hong
    Zhang, Xue-mei
    ACTA PHARMACOLOGICA SINICA, 2022, 43 (03) : 624 - 633
  • [27] Lipopolysaccharide can activate BK channels of arterial smooth muscle in the absence of iNOS expression
    Yakubovich, N
    Eldstrom, JR
    Mathers, DA
    BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2001, 1514 (02): : 239 - 252
  • [28] ION CHANNELS IN VASCULAR SMOOTH-MUSCLE - PHYSIOLOGY AND PHARMACOLOGY
    BOSNJAK, ZJ
    ANESTHESIOLOGY, 1993, 79 (06) : 1392 - 1401
  • [29] THE CHARACTERISTICS AND FUNCTIONAL ROLE OF ION CHANNELS IN CORPORAL SMOOTH MUSCLE
    Lee, Sung Won
    JOURNAL OF SEXUAL MEDICINE, 2013, 10 : 200 - 200
  • [30] The pathobiology of pulmonary hypertension - Smooth muscle cells and ion channels
    Michelakis, ED
    Weir, EK
    CLINICS IN CHEST MEDICINE, 2001, 22 (03) : 419 - +