Amino acid coevolution reveals three-dimensional structure and functional domains of insect odorant receptors

被引:97
作者
Hopf, Thomas A. [1 ,2 ]
Morinaga, Satoshi [3 ,4 ]
Ihara, Sayoko [3 ,4 ]
Touhara, Kazushige [3 ,4 ]
Marks, Debora S. [1 ]
Benton, Richard [5 ]
机构
[1] Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA
[2] Tech Univ Munich, Dept Informat, D-85748 Garching, Germany
[3] Univ Tokyo, Grad Sch Agr & Life Sci, Dept Appl Biol Chem, Tokyo 1138657, Japan
[4] Univ Tokyo, JST, ERATO Touhara Chemosensory Signal Project, Tokyo 1138657, Japan
[5] Univ Lausanne, Fac Biol & Med, Ctr Integrat Genom, CH-1015 Lausanne, Switzerland
基金
欧洲研究理事会; 美国国家卫生研究院; 瑞士国家科学基金会;
关键词
SEX-PHEROMONE RECEPTOR; STRUCTURE PREDICTION; MEMBRANE TOPOLOGY; CORECEPTOR ORCO; SEQUENCE; PROTEINS; SPECIFICITY; SENSITIVITY; EXPRESSION; RESIDUES;
D O I
10.1038/ncomms7077
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Insect odorant receptors (ORs) comprise an enormous protein family that translates environmental chemical signals into neuronal electrical activity. These heptahelical receptors are proposed to function as ligand-gated ion channels and/or to act metabotropically as G protein-coupled receptors (GPCRs). Resolving their signalling mechanism has been hampered by the lack of tertiary structural information and primary sequence similarity to other proteins. We use amino acid evolutionary covariation across these ORs to define restraints on structural proximity of residue pairs, which permit de novo generation of three-dimensional models. The validity of our analysis is supported by the location of functionally important residues in highly constrained regions of the protein. Importantly, insect OR models exhibit a distinct transmembrane domain packing arrangement to that of canonical GPCRs, establishing the structural unrelatedness of these receptor families. The evolutionary couplings and models predict odour binding and ion conduction domains, and provide a template for rationale structure-activity dissection.
引用
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页数:7
相关论文
共 55 条
[1]   Learning generative models for protein fold families [J].
Balakrishnan, Sivaraman ;
Kamisetty, Hetunandan ;
Carbonell, Jaime G. ;
Lee, Su-In ;
Langmead, Christopher James .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2011, 79 (04) :1061-1078
[2]   Atypical membrane topology and heteromeric function of Drosophila odorant receptors in vivo [J].
Benton, R ;
Sachse, S ;
Michnick, SW ;
Vosshall, LB .
PLOS BIOLOGY, 2006, 4 (02) :240-257
[3]   Chemical sensing in Drosophila [J].
Benton, Richard .
CURRENT OPINION IN NEUROBIOLOGY, 2008, 18 (04) :357-363
[4]   TOPCONS: consensus prediction of membrane protein topology [J].
Bernsel, Andreas ;
Viklund, Hakan ;
Hennerdal, Aron ;
Elofsson, Arne .
NUCLEIC ACIDS RESEARCH, 2009, 37 :W465-W468
[5]   Version 1.2 of the Crystallography and NMR system [J].
Brunger, Axel T. .
NATURE PROTOCOLS, 2007, 2 (11) :2728-2733
[6]   Recombinant expression, detergent solubilisation and purification of insect odorant receptor subunits [J].
Carraher, Colm ;
Nazmi, Ali Reza ;
Newcomb, Richard D. ;
Kralicek, Andrew .
PROTEIN EXPRESSION AND PURIFICATION, 2013, 90 (02) :160-169
[7]   High-resolution crystal structure of an engineered human β2-adrenergic G protein-coupled receptor [J].
Cherezov, Vadim ;
Rosenbaum, Daniel M. ;
Hanson, Michael A. ;
Rasmussen, Soren G. F. ;
Thian, Foon Sun ;
Kobilka, Tong Sun ;
Choi, Hee-Jung ;
Kuhn, Peter ;
Weis, William I. ;
Kobilka, Brian K. ;
Stevens, Raymond C. .
SCIENCE, 2007, 318 (5854) :1258-1265
[8]   A novel family of divergent seven-transmembrane proteins:: Candidate odorant receptors in Drosophila [J].
Clyne, PJ ;
Warr, CG ;
Freeman, MR ;
Lessing, D ;
Kim, JH ;
Carlson, JR .
NEURON, 1999, 22 (02) :327-338
[9]   orco mutant mosquitoes lose strong preference for humans and are not repelled by volatile DEET [J].
DeGennaro, Matthew ;
McBride, Carolyn S. ;
Seeholzer, Laura ;
Nakagawa, Takao ;
Dennis, Emily J. ;
Goldman, Chloe ;
Jasinskiene, Nijole ;
James, Anthony A. ;
Vosshall, Leslie B. .
NATURE, 2013, 498 (7455) :487-491
[10]   Integrating the molecular and cellular basis of odor coding in the Drosophila antenna [J].
Dobritsa, AA ;
van der Goes van Naters, W ;
Warr, CG ;
Steinbrecht, RA ;
Carlson, JR .
NEURON, 2003, 37 (05) :827-841