The utility of color normalization for AI-based diagnosis of hematoxylin and eosin-stained pathology images

被引:37
作者
Boschman, Jeffrey [1 ]
Farahani, Hossein [1 ,2 ]
Darbandsari, Amirali [3 ]
Ahmadvand, Pouya [1 ]
Van Spankeren, Ashley [1 ]
Farnell, David [2 ,4 ]
Levine, Adrian B. [2 ,4 ]
Naso, Julia R. [2 ,4 ]
Churg, Andrew [2 ,4 ]
Jones, Steven J. M. [5 ]
Yip, Stephen [2 ,4 ]
Kobel, Martin [6 ]
Huntsman, David G. [2 ,5 ]
Gilks, C. Blake [2 ,4 ]
Bashashati, Ali [1 ,2 ]
机构
[1] Univ British Columbia, Sch Biomed Engn, 2222 Hlth Sci Mall, Vancouver, BC V6T 1Z3, Canada
[2] Univ British Columbia, Dept Pathol & Lab Med, 2222 Hlth Sci Mall, Vancouver, BC V6T 1Z3, Canada
[3] Univ British Columbia, Dept Elect & Comp Engn, Vancouver, BC, Canada
[4] Vancouver Gen Hosp, Vancouver, BC, Canada
[5] British Columbia Canc Res Ctr, Vancouver, BC, Canada
[6] Univ Calgary, Dept Pathol & Lab Med, Calgary, AB, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
color normalization; digital image analysis; machine learning; artificial intelligence; stain normalization; digital pathology; STATISTICAL COMPARISONS; CLASSIFIERS;
D O I
10.1002/path.5797
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
The color variation of hematoxylin and eosin (H&E)-stained tissues has presented a challenge for applications of artificial intelligence (AI) in digital pathology. Many color normalization algorithms have been developed in recent years in order to reduce the color variation between H&E images. However, previous efforts in benchmarking these algorithms have produced conflicting results and none have sufficiently assessed the efficacy of the various color normalization methods for improving diagnostic performance of AI systems. In this study, we systematically investigated eight color normalization algorithms for AI-based classification of H&E-stained histopathology slides, in the context of using images both from one center and from multiple centers. Our results show that color normalization does not consistently improve classification performance when both training and testing data are from a single center. However, using four multi-center datasets of two cancer types (ovarian and pleural) and objective functions, we show that color normalization can significantly improve the classification accuracy of images from external datasets (ovarian cancer: 0.25 AUC increase, p = 1.6 e-05; pleural cancer: 0.21 AUC increase, p = 1.4 e-10). Furthermore, we introduce a novel augmentation strategy by mixing color-normalized images using three easily accessible algorithms that consistently improves the diagnosis of test images from external centers, even when the individual normalization methods had varied results. We anticipate our study to be a starting point for reliable use of color normalization to improve AI-based, digital pathology-empowered diagnosis of cancers sourced from multiple centers. (c) 2021 The Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.
引用
收藏
页码:15 / 24
页数:10
相关论文
共 56 条
[31]  
Paszke A, 2019, ADV NEUR IN, V32
[32]  
Pedregosa F, 2011, J MACH LEARN RES, V12, P2825
[33]   The somatic mutation profiles of 2,433 breast cancers refines their genomic and transcriptomic landscapes [J].
Pereira, Bernard ;
Chin, Suet-Feung ;
Rueda, Oscar M. ;
Vollan, Hans-Kristian Moen ;
Provenzano, Elena ;
Bardwell, Helen A. ;
Pugh, Michelle ;
Jones, Linda ;
Russell, Roslin ;
Sammut, Stephen-John ;
Tsui, Dana W. Y. ;
Liu, Bin ;
Dawson, Sarah-Jane ;
Abraham, Jean ;
Northen, Helen ;
Peden, John F. ;
Mukherjee, Abhik ;
Turashvili, Gulisa ;
Green, Andrew R. ;
McKinney, Steve ;
Oloumi, Arusha ;
Shah, Sohrab ;
Rosenfeld, Nitzan ;
Murphy, Leigh ;
Bentley, David R. ;
Ellis, Ian O. ;
Purushotham, Arnie ;
Pinder, Sarah E. ;
Borresen-Dale, Anne-Lise ;
Earl, Helena M. ;
Pharoah, Paul D. ;
Ross, Mark T. ;
Aparicio, Samuel ;
Caldas, Carlos .
NATURE COMMUNICATIONS, 2016, 7
[34]  
Rabinovich A, 2004, ADV NEUR IN, V16, P667
[35]   Color transfer between images [J].
Reinhard, E ;
Ashikhmin, N ;
Gooch, B ;
Shirley, P .
IEEE COMPUTER GRAPHICS AND APPLICATIONS, 2001, 21 (05) :34-41
[36]   A study about color normalization methods for histopathology images [J].
Roy, Santanu ;
Jain, Alok Kumar ;
Lal, Shyam ;
Kini, Jyoti .
MICRON, 2018, 114 :42-61
[37]  
Ruifrok AC, 2001, ANAL QUANT CYTOL, V23, P291
[38]  
Salehi P, 2020, 2020 INT C MACHINE V, P1, DOI [10.1109/MVIP49855.2020.9116895, DOI 10.1109/MVIP49855.2020.9116895]
[39]   Hierarchical Deep Convolutional Neural Networks for Multi-category Diagnosis of Gastrointestinal Disorders on Histopathological Images [J].
Sali, Rasoul ;
Adewole, Sodiq ;
Ehsan, Lubaina ;
Denson, Lee A. ;
Kelly, Paul ;
Amadi, Beatrice C. ;
Holtz, Lori ;
Ali, Syed Asad ;
Moore, Sean R. ;
Syed, Sana ;
Brown, Donald E. .
2020 8TH IEEE INTERNATIONAL CONFERENCE ON HEALTHCARE INFORMATICS (ICHI 2020), 2020, :69-74
[40]   Stain Color Adaptive Normalization (SCAN) algorithm: Separation and standardization of histological stains in digital pathology [J].
Salvi, Massimo ;
Michielli, Nicola ;
Molinari, Filippo .
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2020, 193 (193)