The efficiency of mitochondrial DNA markers in constructing genetic relationship among Oryx species

被引:0
|
作者
Amer, Sayed Amin Mohamed [1 ,2 ]
Shobrak, Mohammed [3 ]
机构
[1] Taif Univ, Fac Sci, Dept Biotechnol, At Taif, Saudi Arabia
[2] Cairo Univ, Fac Sci, Dept Zool, Cairo, Egypt
[3] Taif Univ, Fac Sci, Dept Biol, At Taif, Saudi Arabia
来源
AFRICAN JOURNAL OF BIOTECHNOLOGY | 2011年 / 10卷 / 22期
关键词
Conservation; endangered species; Oryx; mitochondrial DNA (mtDNA) markers; CONTROL REGION; PHYLOGENETIC-RELATIONSHIPS; FAMILY BOVIDAE; RIBOSOMAL-RNA; CYTOCHROME-B; EVOLUTION; SEQUENCES; DIVERSITY;
D O I
暂无
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
To date, only parts of mitochondrial DNA from cytochrome b, 12S rRNA, 16S rRNA and non-coding D-loop had been sequenced for different species of Oryx. Discrepancy in the genetic relationship among Oryx species was previously revealed when combinations of these sequences were analyzed. In the present study, various combinations of these data sets and different sampling sizes of the closely related tribes of the family Bovidae were manipulated using bioinformatics. These data were used to provide the genetic kinship among different Oryx species. The complete cytochrome b gene sequence was also used alone for the same purpose after excluding the third position of its codons. Using Bayesian (BA), maximum-parsimony (MP), maximum-likelihood (ML) and neighbor-joining (NJ) analytical methods, a single relationship was obtained in which the different Oryx species were sisters and the Arabian Oryx was the oldest. Our results demonstrated that, the molecular markers and the samples size were more robust and efficient in building the relationship than computational methods.
引用
收藏
页码:4581 / 4585
页数:5
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