Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

被引：227
作者：
Seeb, J. E. [1 ]
Carvalho, G. [2 ]
Hauser, L. [1 ]
Naish, K. [1 ]
Roberts, S. [1 ]
Seeb, L. W. [1 ]
机构：
[1] Univ Washington, Sch Aquat & Fishery Sci, Seattle, WA 98195 USA
[2] Bangor Univ, Sch Biol Sci, Mol Ecol & Fisheries Genet Lab, Bangor LL57 2UW, Gwynedd, Wales
来源：
MOLECULAR ECOLOGY RESOURCES | 2011年 / 11卷
关键词：
conservation genomics; next-generation sequencing; population genetics; single-nucleotide polymorphisms; SOCKEYE-SALMON; CROSS-AMPLIFICATION; MOLECULAR MARKERS; CHINOOK SALMON; RAINBOW-TROUT; MICROSATELLITES; LOCI; SELECTION; GENETICS; IDENTIFICATION;
D O I：
10.1111/j.1755-0998.2010.02979.x
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
引用
收藏
页码：1 / 8
页数：8
相关论文
共 66 条
[1]   Discovery and characterization of single-nucleotide polymorphisms in steelhead/rainbow trout, Oncorhynchus mykiss [J].
Abadia-Cardoso, Alicia ;
Clemento, Anthony J. ;
Garza, John Carlos .
MOLECULAR ECOLOGY RESOURCES, 2011, 11 :31-49
[2]  
ACKERMAN MW, T AM FISHER IN PRESS
[3]   Single nucleotide polymorphism (SNP) discovery in mammals: a targeted-gene approach [J].
Aitken, N ;
Smith, S ;
Schwarz, C ;
Morin, PA .
MOLECULAR ECOLOGY, 2004, 13 (06) :1423-1431
[4]   Genomics and the future of conservation genetics [J].
Allendorf, Fred W. ;
Hohenlohe, Paul A. ;
Luikart, Gordon .
NATURE REVIEWS GENETICS, 2010, 11 (10) :697-709
[5]  
AVISE JC, 1975, EVOLUTION, V29, P411, DOI 10.1111/j.1558-5646.1975.tb00831.x
[6]   Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers [J].
Baird, Nathan A. ;
Etter, Paul D. ;
Atwood, Tressa S. ;
Currey, Mark C. ;
Shiver, Anthony L. ;
Lewis, Zachary A. ;
Selker, Eric U. ;
Cresko, William A. ;
Johnson, Eric A. .
PLOS ONE, 2008, 3 (10)
[7]   Stock identification of Fraser River sockeye salmon using microsatellites and major histocompatibility complex variation [J].
Beacham, TD ;
Lapointe, M ;
Candy, JR ;
McIntosh, B ;
MacConnachie, C ;
Tabata, A ;
Kaukinen, K ;
Deng, LT ;
Miller, KM ;
Withler, RE .
TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY, 2004, 133 (05) :1117-1137
[8]   Evaluating loci for use in the genetic analysis of population structure [J].
Beaumont, MA ;
Nichols, RA .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1996, 263 (1377) :1619-1626
[9]  
BRADBURY IR, 2011, MOL ECOLOGY RESOU S1, V11, P207
[10]   Detecting signatures of positive selection in partial sequences generated on a large scale: pitfalls, procedures and resources [J].
Brieuc, Marine S. O. ;
Naish, Kerry A. .
MOLECULAR ECOLOGY RESOURCES, 2011, 11 :172-183
1234567