Reorganizing the familyParvoviridae: a revised taxonomy independent of the canonical approach based on host association

被引:207
作者
Penzes, Judit J. [1 ]
Soderlund-Venermo, Maria [2 ]
Canuti, Marta [3 ]
Eis-Hubinger, Anna Maria [4 ]
Hughes, Joseph [5 ]
Cotmore, Susan F. [6 ]
Harrach, Balazs [7 ]
机构
[1] Univ Florida, McKnight Brain Inst, Ctr Struct Biol, Dept Biochem & Mol Biol, Gainesville, FL 32611 USA
[2] Univ Helsinki, Dept Virol, Helsinki, Finland
[3] Mem Univ Newfoundland, Dept Biol, St John, NF, Canada
[4] Univ Bonn, Med Ctr, Inst Virol, Bonn, Germany
[5] Univ Glasgow, Ctr Virus Res, MRC, Glasgow G61 1QH, Lanark, Scotland
[6] Yale Univ, Sch Med, Dept Lab Med, New Haven, CT 06520 USA
[7] Inst Vet Med Res, Ctr Agr Res, Budapest, Hungary
基金
匈牙利科学研究基金会; 英国医学研究理事会;
关键词
EXPRESSION STRATEGY; GENETIC-CHARACTERIZATION; DENSOVIRUS; PARVOVIRUS; VIRUS; GENOME; ORGANIZATION; DISCOVERY; UNIQUE; GENUS;
D O I
10.1007/s00705-020-04632-4
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Parvoviridae, a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies,ParvovirinaeandDensovirinae, in 1993 to accommodate parvoviruses that infect vertebrate and invertebrate animals, respectively. This relatively straightforward segregation, using host association as the prime criterion for subfamily-level classification, has recently been challenged by the discovery of divergent, vertebrate-infecting parvoviruses, dubbed "chapparvoviruses", which have proven to be more closely related to viruses in certainDensovirinaegenera than to members of theParvovirinae. Viruses belonging to these genera, namelyBrevi-,Hepan- andPenstyldensovirus, are responsible for the unmatched heterogeneity of the subfamilyDensovirinaewhen compared to theParvovirinaein matters of genome organization, protein sequence homology, and phylogeny. Another genus ofDensovirinae,Ambidensovirus, has challenged traditional parvovirus classification, as it includes all newly discovered densoviruses with an ambisense genome organization, which introduces genus-level paraphyly. Lastly, current taxon definition and virus inclusion criteria have significantly limited the classification of certain long-discovered parvoviruses and impedes the classification of some potential family members discovered using high-throughput sequencing methods. Here, we present a new and updated system for parvovirus classification, which includes the introduction of a third subfamily,Hamaparvovirinae, resolves the paraphyly within genusAmbidensovirus, and introduces new genera and species into the subfamilyParvovirinae. These proposals were accepted by the ICTV in 2020 March.
引用
收藏
页码:2133 / 2146
页数:14
相关论文
共 47 条
[31]   Densovirus induces winged morphs in asexual clones of the rosy apple aphid, Dysaphis plantaginea [J].
Ryabov, Eugene V. ;
Keane, Gary ;
Naish, Neil ;
Evered, Carol ;
Winstanley, Doreen .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (21) :8465-8470
[32]   Virome of US bovine calf serum [J].
Sadeghi, Mohammadreza ;
Kapusinszky, Beatrix ;
Yugo, Danielle M. ;
Phan, Tung Gia ;
Deng, Xutao ;
Kanevsky, Isis ;
Opriessnig, Tanja ;
Woolums, Amelia R. ;
Hurley, David J. ;
Meng, Xiang-Jin ;
Delwart, Eric .
BIOLOGICALS, 2017, 46 :64-67
[33]   Structure of an insect parvovirus (Galleria mellonella densovirus) at 3.7 Å resolution [J].
Simpson, AA ;
Chipman, PR ;
Baker, TS ;
Tijssen, P ;
Rossmann, MG .
STRUCTURE WITH FOLDING & DESIGN, 1998, 6 (11) :1355-1367
[34]   ENDEMIC INFECTION OF STRANDED SOUTHERN SEA OTTERS (ENHYDRA LUTRIS NEREIS) WITH NOVEL PARVOVIRUS, POLYOMAVIRUS, AND ADENOVIRUS [J].
Siqueira, Juliana D. ;
Ng, Terry F. ;
Miller, Melissa ;
Li, Linlin ;
Deng, Xutao ;
Dodd, Erin ;
Batac, Francesca ;
Delwart, Eric .
JOURNAL OF WILDLIFE DISEASES, 2017, 53 (03) :532-542
[35]  
Song Wan-ying, 2016, Chinese Journal of Biologicals, V29, P134
[36]   Genetic characterization of a putative densovirus from the mealybug Planococcus citri [J].
Thao, ML ;
Wineriter, S ;
Buckingham, G ;
Baumann, P .
CURRENT MICROBIOLOGY, 2001, 43 (06) :457-458
[37]   Diversity of small, single-stranded DNA viruses of invertebrates and their chaotic evolutionary past [J].
Tijssen, Peter ;
Penzes, Judit J. ;
Yu, Qian ;
Pham, Hanh T. ;
Bergoin, Max .
JOURNAL OF INVERTEBRATE PATHOLOGY, 2016, 140 :83-96
[38]   Sesavirus: prototype of a new parvovirus genus in feces of a sea lion [J].
Tung Gia Phan ;
Gulland, Frances ;
Simeone, Claire ;
Deng, Xutao ;
Delwart, Eric .
VIRUS GENES, 2015, 50 (01) :134-136
[39]   Cutavirus DNA in Malignant and Nonmalignant Skin of Cutaneous T-Cell Lymphoma and Organ Transplant Patients but Not of Healthy Adults [J].
Vaisanen, Elina ;
Fu, Yu ;
Koskenmies, Sari ;
Fyhrquist, Nanna ;
Wang, Yilin ;
Keinonen, Anne ;
Makisalo, Heikki ;
Vakeva, Liisa ;
Pitkanen, Sari ;
Ranki, Annamari ;
Hedman, Klaus ;
Soederlund-Venermo, Maria .
CLINICAL INFECTIOUS DISEASES, 2019, 68 (11) :1904-1910
[40]   Epidemiology of two human protoparvoviruses, bufavirus and tusavirus [J].
Vaisanen, Elina ;
Paloniemi, Minna ;
Kuisma, Inka ;
Lithovius, Vaino ;
Kumar, Arun ;
Franssila, Rauli ;
Ahmed, Kamruddin ;
Delwart, Eric ;
Vesikari, Timo ;
Hedman, Klaus ;
Soderlund-Venermo, Maria .
SCIENTIFIC REPORTS, 2016, 6