Collective dynamics of two-dimensional swimming bacteria: Experiments and models

被引:25
作者
Ariel, Gil [1 ]
Sidortsov, Marina [2 ]
Ryan, Shawn D. [3 ]
Heidenreich, Sebastian [4 ]
Baer, Markus [4 ]
Be'er, Avraham [2 ,5 ]
机构
[1] Bar Ilan Univ, Dept Math, IL-52000 Ramat Gan, Israel
[2] Ben Gurion Univ Negev, Zuckerberg Inst Water Res, Jacob Blaustein Inst Desert Res, Sede Boger Campus, IL-84990 Midreshet Ben Gurion, Israel
[3] Cleveland State Univ, Dept Math, Cleveland, OH 44115 USA
[4] Phys Tech Bundesanstalt Braunschweig & Berlin, Dept Math Modelling & Data Anal, Abbestr 2-12, D-10587 Berlin, Germany
[5] Ben Gurion Univ Negev, Dept Phys, IL-84105 Beer Sheva, Israel
基金
以色列科学基金会;
关键词
SWARMING MOTILITY; CHEMOTAXIS SYSTEM; ESCHERICHIA-COLI; CELL MOTILITY; MOTION; TURBULENCE; DENSITY; HYDRODYNAMICS; FLUCTUATIONS; TYPHIMURIUM;
D O I
10.1103/PhysRevE.98.032415
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
The physical properties of collectively swimming bacteria have been thoroughly investigated both experimentally and theoretically using simulations. While models successfully predict some aspects of the dynamics observed in experiments, both models and experiments vary in their underlying assumptions and physical conditions. Hence, it is not clear which models are appropriate for which experimental setups. Here, we study, both experimentally and using two types of models (agent-based and continuous), the statistics of two strains of Serratia marcescens, wild-type and a nontumbling strain, swimming on a two-dimensional monolayer at varying concentrations. The experimental setup allows for a direct comparison with simulation results. Both models capture some aspects of the dynamics but fail at displaying others, especially at high densities. In particular, the effect of tumbling is much more significant than mere rotational (angular) diffusion.
引用
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页数:10
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