Genome-wide analysis and expression profiling of the heat shock transcription factor gene family in Physic Nut (Jatropha curcas L.)

被引:6
作者
Zhang, Lin [1 ]
Chen, Wei [1 ]
Shi, Ben [1 ]
机构
[1] Luoyang Inst Sci & Technol, Sch Environm Engn & Chem, Luoyang, Henan, Peoples R China
来源
PEERJ | 2020年 / 8卷
关键词
Jatropha; Heat shock transcription factor; Gene family; Abiotic stress; Gene expression; STRESS TOLERANCE; ABIOTIC STRESSES; ARABIDOPSIS; OVEREXPRESSION; CLASSIFICATION; IDENTIFICATION; RICE;
D O I
10.7717/peerj.8467
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The heat shock transcription factor (Hsf) family, identified as one of the important gene families, participates in plant development process and some stress response. So far, there have been no reports on the research of the Hsf transcription factors in physic nut. In this study, seventeen putative Hsf genes identified from physic nut genome. Phylogenetic analysis manifested these genes classified into three groups: A, B and C. Chromosomal location showed that they distributed eight out of eleven linkage groups. Expression profiling indicated that fourteen JcHsf genes highly expressed in different tissues except JcHsf1, JcHsf6 and JcHsf13. In addition, induction of six and twelve JcHsf genes noted against salt stress and drought stress, respectively, which demonstrated that the JcHsf genes are involved in abiotic stress responses. Our results contribute to a better understanding of the JcHsf gene family and further study of its function.
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页数:17
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共 40 条
  • [1] Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b regulates multiple developmental genes under benign and stress conditions
    Albihlal, Waleed S.
    Obomighie, Irabonosi
    Blein, Thomas
    Persad, Ramona
    Chernukhin, Igor
    Crespi, Martin
    Bechtold, Ulrike
    Mullineaux, Philip M.
    [J]. JOURNAL OF EXPERIMENTAL BOTANY, 2018, 69 (11) : 2847 - 2862
  • [2] [Anonymous], 1998, MOL GEN GENET
  • [3] [Anonymous], 2016, FRONT PLANT SCI, DOI [DOI 10.3389/fpls.2016.00114, DOI 10.3389/FPLS.2016.00114]
  • [4] MEME SUITE: tools for motif discovery and searching
    Bailey, Timothy L.
    Boden, Mikael
    Buske, Fabian A.
    Frith, Martin
    Grant, Charles E.
    Clementi, Luca
    Ren, Jingyuan
    Li, Wilfred W.
    Noble, William S.
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : W202 - W208
  • [5] A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis
    Charng, Yee-yung
    Liu, Hsiang-chin
    Liu, Nai-yu
    Chi, Wen-tzu
    Wang, Chun-neng
    Chang, Shih-hsun
    Wang, Tsu-tsuen
    [J]. PLANT PHYSIOLOGY, 2007, 143 (01) : 251 - 262
  • [6] Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress
    Chauhan, Harsh
    Khurana, Neetika
    Agarwal, Pinky
    Khurana, Paramjit
    [J]. MOLECULAR GENETICS AND GENOMICS, 2011, 286 (02) : 171 - 187
  • [7] Genome-Wide Analysis and Molecular Characterization of Heat Shock Transcription Factor Family in Glycine max
    Chung, Eunsook
    Kim, Kyoung-Mi
    Lee, Jai-Heon
    [J]. JOURNAL OF GENETICS AND GENOMICS, 2013, 40 (03) : 127 - 135
  • [8] Biology and genetic improvement of Jatropha curcas L.: A review
    Divakara, B. N.
    Upadhyaya, H. D.
    Wani, S. P.
    Gowda, C. L. Laxmipathi
    [J]. APPLIED ENERGY, 2010, 87 (03) : 732 - 742
  • [9] Accelerated Profile HMM Searches
    Eddy, Sean R.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2011, 7 (10)
  • [10] Guo An-Yuan, 2007, Yichuan, V29, P1023, DOI 10.1360/yc-007-1023