Second SH3 domain of ponsin solved from powder diffraction

被引:37
|
作者
Margiolaki, Irene
Wright, Jonathan P.
Wilmanns, Matthias
Fitch, Andrew N.
Pinotsis, Nikos
机构
[1] European Synchrotron Radiat Facil, F-38043 Grenoble, France
[2] DESY, European Mol Biol Lab, D-22603 Hamburg, Germany
关键词
MOLECULAR-CRYSTAL STRUCTURES; EGG-WHITE LYSOZYME; REFINEMENT; RESOLUTION; MODEL; RECOGNITION; REPLACEMENT; QUALITY;
D O I
10.1021/ja073846c
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Determination of protein crystal structures is dependent on the growth of high-quality single crystals, a process that is not always successful. Optimum crystallization conditions must be systematically sought for, and microcrystalline powders are frequently obtained in failed attempts to grow the desired crystal. In materials science, structures of samples ranging from ceramics, pharmaceuticals, zeolites, etc., can nowadays be solved, almost routinely, from powdered samples, and there seems to be no fundamental reason, except the sheer size and complexity of the structures involved, why powder diffraction should not be employed to solve structures of small proteins. Indeed, recent work has shown that the high-quality powder diffraction data can be used in the study of protein crystal structures. We report the solution, model building, and refinement of a 67-residue protein domain crystal structure, with a cell volume of 64 879 angstrom(3), from powder diffraction. The second SH3 domain of ponsin, a protein of high biological significance due to its role in cellular processes, is determined and refined to resolution limits comparable to single-crystal techniques. Our results demonstrate the power and future applicability of the powder technique in structural biology.
引用
收藏
页码:11865 / 11871
页数:7
相关论文
共 50 条
  • [31] Regions outside of conserved PxxPxR motifs drive the high affinity interaction of GRB2 with SH3 domain ligands
    Bartelt, Rebekah R.
    Light, Jonathan
    Vacaflores, Aldo
    Butcher, Alayna
    Pandian, Madhana
    Nash, Piers
    Houtrnan, Jon C. D.
    BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH, 2015, 1853 (10): : 2560 - 2569
  • [32] The novel SH3 domain protein Dlish/CG10933 mediates fat signaling in Drosophila by binding and regulating Dachs
    Zhang, Yifei
    Wang, Xing
    Matakatsu, Hitoshi
    Fehon, Richard
    Blair, Seth S.
    ELIFE, 2016, 5
  • [33] A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains
    Kundu, Kousik
    Costa, Fabrizio
    Backofen, Rolf
    BIOINFORMATICS, 2013, 29 (13) : 335 - 343
  • [34] Crystal structure of copper(II) citrate monohydrate solved from a mixture powder X-ray diffraction pattern
    Palcic, Ana
    Halasz, Ivan
    Bronic, Josip
    POWDER DIFFRACTION, 2014, 29 (01) : 28 - 32
  • [35] Structural Basis of the High Affinity Interaction between the Alphavirus Nonstructural Protein-3 (nsP3) and the SH3 Domain of Amphiphysin-2
    Tossavainen, Helena
    Aitio, Olli
    Hellman, Maarit
    Saksela, Kalle
    Permi, Perttu
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2016, 291 (31) : 16307 - 16317
  • [36] Molecular basis of interactions between SH3 domain-containing proteins and the proline-rich region of the ubiquitin ligase Itch
    Desrochers, Guillaume
    Cappadocia, Laurent
    Lussier-Price, Mathieu
    Ton, Anh-Tien
    Ayoubi, Riham
    Serohijos, Adrian
    Omichinski, James G.
    Angers, Annie
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2017, 292 (15) : 6325 - 6338
  • [37] Machine Learning Quantitative Structure-Activity Relationships (QSAR) for Peptides Binding to the Human Amphiphysin-1 SH3 Domain
    Ivanciuc, Ovidiu
    CURRENT PROTEOMICS, 2009, 6 (04) : 289 - 302
  • [38] Structural studies of the phosphatidylinositol 3-kinase (PI3K) SH3 domain in complex with a peptide ligand: role of the anchor residue in ligand binding
    Batra-Safferling, Renu
    Granzin, Joachim
    Moedder, Susanne
    Hoffmann, Silke
    Willbold, Dieter
    BIOLOGICAL CHEMISTRY, 2010, 391 (01) : 33 - 42
  • [39] Structure-based statistical modeling and analysis of peptide affinity and cross-reactivity to human senile osteoporosis OSF SH3 domain
    Zhang, Wei
    Zhong, Biao
    Zhan, Yulin
    Luo, Congfeng
    JOURNAL OF CHEMOMETRICS, 2018, 32 (03)
  • [40] Differential Dynamic Engagement within 24 SH3 Domain: Peptide Complexes Revealed by Co-Linear Chemical Shift Perturbation Analysis
    Stollar, Elliott J.
    Lin, Hong
    Davidson, Alan R.
    Forman-Kay, Julie D.
    PLOS ONE, 2012, 7 (12):