Expanded genetic screening panel for the Ashkenazi Jewish population

被引:23
|
作者
Baskovich, Brett [1 ,2 ]
Hiraki, Susan
Upadhyay, Kinnari
Meyer, Philip
Carmi, Shai [3 ]
Barzilai, Nir
Darvasi, Ariel [4 ]
Ozelius, Laurie [5 ]
Peter, Inga [5 ]
Cho, Judy H. [5 ]
Atzmon, Gil [6 ]
Clark, Lorraine [7 ]
Yu, Jin [8 ]
Lencz, Todd [8 ]
Pe'er, Itsik [9 ]
Ostrer, Harry [1 ,2 ]
Oddoux, Carole [1 ,2 ]
机构
[1] Montefiore Med Ctr, Dept Pathol, New York, NY USA
[2] Yeshiva Univ, Albert Einstein Coll Med, Dept Pathol, New York, NY 10033 USA
[3] Hebrew Univ Jerusalem, Fac Med, Braun Sch Publ Hlth, Jerusalem, Israel
[4] Hebrew Univ Jerusalem, Dept Genet, Jerusalem, Israel
[5] Icahn Sch Med Mt Sinai, Sch Med, Dept Genet, New York, NY 10029 USA
[6] Univ Haifa, Fac Nat Sci, IL-31999 Haifa, Israel
[7] Columbia Univ, Dept Pathol, New York, NY USA
[8] Feinstein Inst Med Res, Manhasset, NY USA
[9] Columbia Univ, Dept Comp Sci, New York, NY 10027 USA
基金
美国国家科学基金会;
关键词
Ashkenazi Jews; carrier screening; genetic testing; variant annotation; whole genome sequencing; LOW-PENETRANCE; DISEASE; MUTATIONS; VARIANTS; JEWS; FREQUENCY; GENOMICS; LESSONS; GJB2;
D O I
10.1038/gim.2015.123
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Purpose: Carrier screening programs that identify the presence of known mutations have been effective for reducing the incidence of autosomal recessive conditions in the Ashkenazi Jewish (AJ) population and other populations. Yet, these programs have not realized their full potential. Furthermore, many known autosomal recessive and dominant conditions are not screened for and the molecular basis of other conditions for which screening might be offered is unknown. Methods: Through literature review and annotation of full sequenced genomes from healthy individuals, we expanded the list of mutations. Mutations were identified in a sample of 128 fully sequenced AJ genomes that were filtered through clinical databases and curated manually for clinical validity and utility using the American College of Medical Genetics and Genomics scoring (ACMG) system. Other known mutations were identified through literature review. Results: A panel of 163 mutations was identified for 76 autosomal recessive, 24 autosomal dominant, and 3 X-linked disorders. Conclusion: Screening for a broader range of disorders not only could further reduce the incidence of autosomal recessive disorders but also could offer the benefits of early or presymptomatic diagnosis.
引用
收藏
页码:522 / 528
页数:7
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