Cytochrome c oxidase subunit 1 barcode data of fish of the Nayband National Park in the Persian Gulf and analysis using meta-data flag several cryptic species

被引:50
作者
Asgharian, Hosseinali [1 ]
Sahafi, Homayoun Hosseinzadeh [2 ]
Ardalan, Aria Ashja [3 ]
Shekarriz, Shahrokh [4 ]
Elahi, Elahe [1 ,5 ,6 ]
机构
[1] Univ Tehran, Dept Biotechnol, Coll Sci, Tehran 141556455, Iran
[2] Iranian Fisheries Res Org, Tehran 141556116, Iran
[3] Islamic Azad Univ, Fac Marine Sci & Technol, N Branch Tehran, Tehran 1987973133, Iran
[4] Islamic Azad Univ, Dept Biol, Qods Branch Tehran, Tehran 37437515, Iran
[5] Univ Tehran, Sch Biol, Coll Sci, Tehran 141556455, Iran
[6] Univ Tehran, Ctr Excellence Biomath, Sch Math Stat & Comp Sci, Coll Sci, Tehran 141556455, Iran
关键词
16S rDNA; cytochrome c oxidase subunit 1; DNA barcoding; fish identification; Nayband National Park; Persian Gulf; DNA BARCODES; BIOLOGICAL IDENTIFICATIONS; DIVERSITY; REEF; TAXONOMY; LIFE;
D O I
10.1111/j.1755-0998.2011.02989.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We provide cytochrome c oxidase subunit 1 (COI) barcode sequences of fishes of the Nayband National Park, Persian Gulf, Iran. Industrial activities, ecological considerations and goals of The Fish Barcode of Life campaign make it crucial that fish species residing in the park be identified. To the best of our knowledge, this is the first report of barcoding data on fishes of the Persian Gulf. We examined 187 individuals representing 76 species, 56 genera and 32 families. The data flagged potentially cryptic species of Gerres filamentosus and Plectorhinchus schotaf. 16S rDNA data on these species are provided. Exclusion of these two potential cryptic species resulted in a mean COI intraspecific distance of 0.18%, and a mean inter- to intraspecific divergence ratio of 66.7. There was no overlap between maximum Kimura 2-parameter distances among conspecifics (1.66%) and minimum distance among congeneric species (6.19%). Barcodes shared among species were not observed. Neighbour-joining analysis showed that most species formed cohesive sequence units with little variation. Finally, the comparison of 16 selected species from this study with meta-data of conspecifics from Australia, India, China and South Africa revealed high interregion divergences and potential existence of six cryptic species. Pairwise interregional comparisons were more informative than global divergence assessments with regard to detection of cryptic variation. Our analysis exemplifies optimal use of the expanding barcode data now becoming available.
引用
收藏
页码:461 / 472
页数:12
相关论文
共 37 条
  • [1] [Anonymous], SMITHS SEA FISHES
  • [2] DNA barcoding for conservation and management of Amazonian commercial fish
    Ardura, Alba
    Linde, Ana Rosa
    Moreira, Josino C.
    Garcia-Vazquez, Eva
    [J]. BIOLOGICAL CONSERVATION, 2010, 143 (06) : 1438 - 1443
  • [3] DNA barcodes for biosecurity: invasive species identification
    Armstrong, KF
    Ball, SL
    [J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) : 1813 - 1823
  • [4] Estimating diversity of Indo-Pacific coral reef stomatopods through DNA barcoding of stomatopod larvae
    Barber, Paul
    Boyce, Sarah L.
    [J]. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2006, 273 (1597) : 2053 - 2061
  • [5] Bisby FA., 2010, SPECIES 2000 ITIS CA
  • [6] Defining operational taxonomic units using DNA barcode data
    Blaxter, M
    Mann, J
    Chapman, T
    Thomas, F
    Whitton, C
    Floyd, R
    Abebe, E
    [J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) : 1935 - 1943
  • [7] Biological identifications through DNA barcodes: the case of the Crustacea
    Costa, Filipe O.
    deWaard, Jeremy R.
    Boutillier, James
    Ratnasingham, Sujeevan
    Dooh, Robert T.
    Hajibabaei, Mehrdad
    Hebert, Paul D. N.
    [J]. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 2007, 64 (02) : 272 - 295
  • [8] Identification of gadoid species (Pisces, Gadidae) by sequencing and PCR-RFLP analysis of mitochondrial 12S and 16S rRNA gene fragments
    Di Finizio, Alessandra
    Guerriero, Giulia
    Russo, Gian Luigi
    Ciarcia, Gaetano
    [J]. EUROPEAN FOOD RESEARCH AND TECHNOLOGY, 2007, 225 (3-4) : 337 - 344
  • [9] Fischer W., 1984, FAO SPECIES IDENTIFI
  • [10] PCR-based methods for fish and fishery products authentication
    Gil, Luis Asensio
    [J]. TRENDS IN FOOD SCIENCE & TECHNOLOGY, 2007, 18 (11) : 558 - 566