Reversal of Histone Methylation: Biochemical and Molecular Mechanisms of Histone Demethylases

被引:436
作者
Mosammaparast, Nima [1 ,2 ]
Shi, Yang [1 ,3 ]
机构
[1] Harvard Univ, Sch Med, Dept Pathol, Childrens Hosp, Boston, MA 02115 USA
[2] Harvard Univ, Sch Med, Dept Lab Med, Childrens Hosp, Boston, MA 02115 USA
[3] Harvard Univ, Sch Med, Dept Med, Childrens Hosp,Div Newborn Med, Boston, MA 02115 USA
来源
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 | 2010年 / 79卷
关键词
chromatin; demethylase; epigenetics; transcription; H3; LYSINE-4; METHYLATION; STRUCTURAL BASIS; CHROMATIN-STRUCTURE; METHYLTRANSFERASE ACTIVITY; OXIDATIVE DEMETHYLATION; ARGININE METHYLATION; CRYSTAL-STRUCTURE; GENE ACTIVATION; TARGET GENES; JMJD2; FAMILY;
D O I
10.1146/annurev.biochem.78.070907.103946
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The importance of histone methylation in gene regulation was suggested over 40 years ago. Yet, the dynamic nature of this histone modification was recognized only recently, with the discovery of the first histone demethylase nearly five years ago. Since then, our insight into the mechanisms, structures, and macromolecular complexes of these enzymes has grown exponentially. Overall, the evidence strongly supports a key role for histone demethylases in eukaryotic transcription and other chromatin-dependent processes. Here, we examine these and related facets of histone demethylases discovered to date, focusing on their biochemistry, structure, and enzymology.
引用
收藏
页码:155 / 179
页数:25
相关论文
共 140 条
[41]   A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes [J].
Hakimi, MA ;
Dong, Y ;
Lane, WS ;
Speicher, DW ;
Shiekhattar, R .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (09) :7234-7239
[42]   Histone modifications at human enhancers reflect global cell-type-specific gene expression [J].
Heintzman, Nathaniel D. ;
Hon, Gary C. ;
Hawkins, R. David ;
Kheradpour, Pouya ;
Stark, Alexander ;
Harp, Lindsey F. ;
Ye, Zhen ;
Lee, Leonard K. ;
Stuart, Rhona K. ;
Ching, Christina W. ;
Ching, Keith A. ;
Antosiewicz-Bourget, Jessica E. ;
Liu, Hui ;
Zhang, Xinmin ;
Green, Roland D. ;
Lobanenkov, Victor V. ;
Stewart, Ron ;
Thomson, James A. ;
Crawford, Gregory E. ;
Kellis, Manolis ;
Ren, Bing .
NATURE, 2009, 459 (7243) :108-112
[43]   Enhancing nuclear receptor-induced transcription requires nuclear motor and LSD1-dependent gene networking in interchromatin granules [J].
Hu, Qidong ;
Kwon, Young-Soo ;
Nunez, Esperanza ;
Cardamone, Maria Dafne ;
Hutt, Kasey R. ;
Ohgi, Kenneth A. ;
Garcia-Bassets, Ivan ;
Rose, David W. ;
Glass, Christopher K. ;
Rosenfeld, Michael G. ;
Fu, Xiang-Dong .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (49) :19199-19204
[44]   p53 is regulated by the lysine demethylase LSD1 [J].
Huang, Jing ;
Sengupta, Roopsha ;
Espejo, Alexsandra B. ;
Lee, Min Gyu ;
Dorsey, Jean A. ;
Richter, Mario ;
Opravil, Susanne ;
Shiekhattar, Ramin ;
Bedford, Mark T. ;
Jenuwein, Thomas ;
Berger, Shelley L. .
NATURE, 2007, 449 (7158) :105-U80
[45]   Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A [J].
Huang, Y ;
Fang, J ;
Bedford, MT ;
Zhang, Y ;
Xu, RM .
SCIENCE, 2006, 312 (5774) :748-751
[46]   Inhibition of lysine-specific demethylase 1 by polyamine analogues results in reexpression of aberrantly silenced genes [J].
Huang, Yi ;
Greene, Eriko ;
Stewart, Tracy Murray ;
Goodwin, Andrew C. ;
Baylin, Stephen B. ;
Wostert, Patrick M. ;
Casero, Robert A., Jr. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (19) :8023-8028
[47]   Knockdown of ALR (MLL2) reveals ALR target genes and leads to alterations in cell adhesion and growth [J].
Issaeva, Irina ;
Zonis, Yulia ;
Rozovskaia, Tanya ;
Orlovsky, Kira ;
Croce, Carlo M. ;
Nakamura, Tatsuya ;
Mazo, Alex ;
Eisenbach, Lea ;
Canaani, Eli .
MOLECULAR AND CELLULAR BIOLOGY, 2007, 27 (05) :1889-1903
[48]   The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases [J].
Iwase, Shigeki ;
Lan, Fei ;
Bayliss, Peter ;
de la Torre-Ubieta, Luis ;
Huarte, Maite ;
Qi, Hank H. ;
Whetstine, Johnathan R. ;
Bonni, Azad ;
Roberts, Thomas M. ;
Shi, Yang .
CELL, 2007, 128 (06) :1077-1088
[49]   Arabidopsis relatives of the human lysine-specific demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition [J].
Jiang, Danhua ;
Yang, Wannian ;
He, Yuehui ;
Amasino, Richard M. .
PLANT CELL, 2007, 19 (10) :2975-2987
[50]   Proline hydroxylation and gene expression [J].
Kaelin, WG .
ANNUAL REVIEW OF BIOCHEMISTRY, 2005, 74 :115-128