An efficient real space multigrid OM/MM electrostatic coupling

被引:237
作者
Laino, T
Mohamed, F
Laio, A
Parrinello, M
机构
[1] ETH, DCHAB, CH-6900 Lugano, Switzerland
[2] Scuola Normale Super Pisa, I-56125 Pisa, Italy
关键词
D O I
10.1021/ct050123f
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A popular strategy for simulating large systems where quantum chemical effects are important is the use of mixed quantum mechanical/molecular mechanics methods (QM/MM). While the cost of solving the Schrodinger equation in the QM part is the bottleneck of these calculations, evaluating the Coulomb interaction between the QM and the MM part is surprisingly expensive. In fact it can be just as time-consuming as solving the QM part. We present here a novel real space multigrid approach that handles Coulomb interactions very effectively and implement it in the CP2K code. This novel scheme cuts the cost of this part of the calculation by 2 orders of magnitude. The method does not need very fine-tuning or adjustable parameters, and it is quite accurate, leading to a dynamics with very good energy conservation. We exemplify the validity of our algorithms with simulations of water and of a zwitterionic dipeptide solvated in water.
引用
收藏
页码:1176 / 1184
页数:9
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