Candidate regulators and target genes of drought stress in needles and roots of Norway spruce

被引:23
作者
Haas, Julia C. [1 ]
Vergara, Alexander [2 ]
Serrano, Alonso R. [2 ]
Mishra, Sanatkumar [2 ]
Hurry, Vaughan [2 ]
Street, Nathaniel R. [1 ]
机构
[1] Umea Univ, Umea Plant Sci Ctr, Dept Plant Physiol, SE-90187 Umea, Sweden
[2] Swedish Univ Agr Sci SLU, Umea Plant Sci Ctr, Dept Forest Genet & Plant Physiol, SE-90183 Umea, Sweden
关键词
ABA; drought stress; gene expression; Norway spruce; Picea abies; RNA-Seq; transcriptome; NAC TRANSCRIPTION FACTORS; PHYSIOLOGICAL-RESPONSES; TREE MORTALITY; ABIOTIC STRESS; CLIMATE-CHANGE; SCOTS PINE; ARABIDOPSIS; TOLERANCE; COLD; NETWORKS;
D O I
10.1093/treephys/tpaa178
中图分类号
S7 [林业];
学科分类号
0829 ; 0907 ;
摘要
Drought stress impacts seedling establishment, survival and whole-plant productivity. Molecular responses to drought stress have been most extensively studied in herbaceous species, mostly considering only aboveground tissues. Coniferous tree species dominate boreal forests, which are predicted to be exposed to more frequent and acute drought as a result of ongoing climate change. The associated impact at all stages of the forest tree life cycle is expected to have large-scale ecological and economic impacts. However, the molecular response to drought has not been comprehensively profiled for coniferous species. We assayed the physiological and transcriptional response of Picea abies (L.) H. Karst seedling needles and roots after exposure to mild and severe drought. Shoots and needles showed an extensive reversible plasticity for physiological measures indicative of drought-response mechanisms, including changes in stomatal conductance (g(s)), shoot water potential and abscisic acid (ABA). In both tissues, the most commonly observed expression profiles in response to drought were highly correlated with the ABA levels. Still, root and needle transcriptional responses contrasted, with extensive root-specific down-regulation of growth. Comparison between previously characterized Arabidopsis thaliana L. drought-response genes and P. abies revealed both conservation and divergence of transcriptional response to drought. In P. abies, transcription factors belonging to the ABA responsive element(ABRE) binding/ABRE binding factors ABA-dependent pathway had a more limited role. These results highlight the importance of profiling both above- and belowground tissues, and provide a comprehensive framework to advance the understanding of the drought response of P. abies. The results demonstrate that a short-term, severe drought induces severe physiological responses coupled to extensive transcriptome modulation and highlight the susceptibility of Norway spruce seedlings to such drought events.
引用
收藏
页码:1230 / 1246
页数:17
相关论文
共 102 条
[1]   Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling [J].
Abe, H ;
Urao, T ;
Ito, T ;
Seki, M ;
Shinozaki, K ;
Yamaguchi-Shinozaki, K .
PLANT CELL, 2003, 15 (01) :63-78
[2]   A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance [J].
Agarwal, Manu ;
Hao, Yujin ;
Kapoor, Avnish ;
Dong, Chun-Hai ;
Fujii, Hiroaki ;
Zheng, Xianwu ;
Zhu, Jian-Kang .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (49) :37636-37645
[3]   A global overview of drought and heat-induced tree mortality reveals emerging climate change risks for forests [J].
Allen, Craig D. ;
Macalady, Alison K. ;
Chenchouni, Haroun ;
Bachelet, Dominique ;
McDowell, Nate ;
Vennetier, Michel ;
Kitzberger, Thomas ;
Rigling, Andreas ;
Breshears, David D. ;
Hogg, E. H. ;
Gonzalez, Patrick ;
Fensham, Rod ;
Zhang, Zhen ;
Castro, Jorge ;
Demidova, Natalia ;
Lim, Jong-Hwan ;
Allard, Gillian ;
Running, Steven W. ;
Semerci, Akkin ;
Cobb, Neil .
FOREST ECOLOGY AND MANAGEMENT, 2010, 259 (04) :660-684
[4]   DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species [J].
Alter, Svenja ;
Bader, Kai C. ;
Spannagl, Manuel ;
Wang, Yu ;
Bauer, Eva ;
Schoen, Chris-Carolin ;
Mayer, Klaus F. X. .
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2015,
[5]   HTSeq-a Python']Python framework to work with high-throughput sequencing data [J].
Anders, Simon ;
Pyl, Paul Theodor ;
Huber, Wolfgang .
BIOINFORMATICS, 2015, 31 (02) :166-169
[6]  
[Anonymous], 1996, Climate Change 1995. Impacts
[7]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[8]   Plant MYB Transcription Factors: Their Role in Drought Response Mechanisms [J].
Baldoni, Elena ;
Genga, Annamaria ;
Cominelli, Eleonora .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2015, 16 (07) :15811-15851
[9]   Changes in forest productivity across Alaska consistent with biome shift [J].
Beck, Pieter S. A. ;
Juday, Glenn P. ;
Alix, Claire ;
Barber, Valerie A. ;
Winslow, Stephen E. ;
Sousa, Emily E. ;
Heiser, Patricia ;
Herriges, James D. ;
Goetz, Scott J. .
ECOLOGY LETTERS, 2011, 14 (04) :373-379
[10]   Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation [J].
Beike, Anna K. ;
Lang, Daniel ;
Zimmer, Andreas D. ;
Wuest, Florian ;
Trautmann, Danika ;
Wiedemann, Gertrud ;
Beyer, Peter ;
Decker, Eva L. ;
Reski, Ralf .
NEW PHYTOLOGIST, 2015, 205 (02) :869-881