Complete plastome sequence of Piper laetispicum (Piperaceae): An endemic plant species in South China

被引:5
作者
Wang, Ming-Tao [1 ]
Wang, Jian-Hua [1 ]
Zhao, Kun-Kun [1 ]
Zhu, Zhi-Xin [1 ]
Wang, Hua-Feng [1 ]
机构
[1] Hainan Univ, Inst Trop Agr & Forestry, Hainan Key Lab Sustainable Utilizat Trop Bioresou, Haikou 570228, Hainan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 02期
关键词
Piper laetispicum; plastome; phylogeny; genome structure; Piperaceae;
D O I
10.1080/23802359.2018.1511850
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Piper laetispicum is dioecious climbers woody with 10 m tall, which is an endemic species in China. It grows on trees or rocks in forests (100-600 m) in Guangdong and Hainan Province of China. Here, we report and characterize the complete plastid genome sequence of P. laetispicum in an effort to provide genomic resources useful for promoting its conservation. The complete plastome is 161,721 bp in length and contains the typical structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 27,125 bp, a large single copy (LSC) region of 89,224 bp and a small single copy (SSC) region of 18,247 bp. The plastome contains 114 genes, consisting of 80 unique protein-coding genes, 30 unique tRNA gene, and four unique rRNA genes. The overall A/T content in the plastome of P. laetispicum is 61.70%. The complete plastome sequence of P. laetispicum will provide a useful resource for the conservation genetics of this species as well as for the phylogenetic studies for Piper.
引用
收藏
页码:1035 / 1036
页数:2
相关论文
共 6 条
  • [1] Doyle J.J., 1987, Phytochemical Bulletin, V19, P11
  • [2] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach
    Hahn, Christoph
    Bachmann, Lutz
    Chevreux, Bastien
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (13) : e129
  • [3] The complete plastid genome of Piper kadsura (Piperaceae), an East Asian woody vine
    Lee, Jung-Hyun
    Choi, In-Su
    Choi, Byoung-Hee
    Yang, Sungyu
    Choi, Goya
    [J]. MITOCHONDRIAL DNA PART A, 2016, 27 (05) : 3555 - 3556
  • [4] RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    Stamatakis, Alexandros
    [J]. BIOINFORMATICS, 2006, 22 (21) : 2688 - 2690
  • [5] Automatic annotation of organellar genomes with DOGMA
    Wyman, SK
    Jansen, RK
    Boore, JL
    [J]. BIOINFORMATICS, 2004, 20 (17) : 3252 - 3255
  • [6] Yongqian C., 1999, FLORA CHINA VOLUME 4, V4, P110