An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding

被引:216
作者
Taylor, H. R. [1 ,2 ]
Harris, W. E. [2 ]
机构
[1] Victoria Univ Wellington, Allan Wilson Ctr Mol Ecol & Evolut, Sch Biol Sci, Wellington, New Zealand
[2] Manchester Metropolitan Univ, Sch Sci & Environm, Manchester M1 5GD, Lancs, England
关键词
barcoding; genetic diagnostics; genetic distance; next generation sequencing; FRESH-WATER FISHES; CRYPTIC DIVERSITY; SPECIES IDENTIFICATION; BIOLOGICAL IDENTIFICATIONS; MOLECULAR SYSTEMATICS; IDENTIFYING SPIDERS; CANADIAN WATERS; TUNA SUSHI; REVEALS; TAXONOMY;
D O I
10.1111/j.1755-0998.2012.03119.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
DNA barcoding has become a well-funded, global enterprise since its proposition as a technique for species identification, delimitation and discovery in 2003. However, the rapid development of next generation sequencing (NGS) has the potential to render DNA barcoding irrelevant because of the speed with which it generates large volumes of genomic data. To avoid obsolescence, the DNA barcoding movement must adapt to use this new technology. This review examines the DNA barcoding enterprise, its continued resistance to improvement and the implications of this on the future of the discipline. We present the consistent failure of DNA barcoding to recognize its limitations and evolve its methodologies, reducing the usefulness of the data produced by the movement and throwing into doubt its ability to embrace NGS.
引用
收藏
页码:377 / 388
页数:12
相关论文
共 113 条
  • [1] Perspective: conservation genetics enters the genomics era
    Avise, John C.
    [J]. CONSERVATION GENETICS, 2010, 11 (02) : 665 - 669
  • [2] Awano T, 2009, P NATL ACAD SCI USA, V106, P2794, DOI [10.1073/pnas.0812297106, 10.1073/pnas.0905845106]
  • [3] Biological identifications of mayflies (Ephemeroptera) using DNA barcodes
    Ball, SL
    Hebert, PDN
    Burian, SK
    Webb, JM
    [J]. JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY, 2005, 24 (03): : 508 - 524
  • [4] Estimating diversity of Indo-Pacific coral reef stomatopods through DNA barcoding of stomatopod larvae
    Barber, Paul
    Boyce, Sarah L.
    [J]. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2006, 273 (1597) : 2053 - 2061
  • [5] DNA barcoding reveals fraudulent substitutions in shark seafood products: The Italian case of "palombo" (Mustelus spp.)
    Barbuto, M.
    Galimberti, A.
    Ferri, E.
    Labra, M.
    Malandra, R.
    Galli, P.
    Casiraghi, M.
    [J]. FOOD RESEARCH INTERNATIONAL, 2010, 43 (01) : 376 - 381
  • [6] Current state and perspectives of fungal DNA barcoding and rapid identification procedures
    Begerow, Dominik
    Nilsson, Henrik
    Unterseher, Martin
    Maier, Wolfgang
    [J]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2010, 87 (01) : 99 - 108
  • [7] ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
    Bellemain, Eva
    Carlsen, Tor
    Brochmann, Christian
    Coissac, Eric
    Taberlet, Pierre
    Kauserud, Havard
    [J]. BMC MICROBIOLOGY, 2010, 10
  • [8] Character-based DNA barcoding: a superior tool for species classification
    Bergmann, Tjard
    Hadrys, Heike
    Breves, Gerhard
    Schierwater, Bernd
    [J]. BERLINER UND MUNCHENER TIERARZTLICHE WOCHENSCHRIFT, 2009, 122 (11-12): : 446 - 450
  • [9] Molecular systematics - Counting angels with DNA
    Blaxter, M
    [J]. NATURE, 2003, 421 (6919) : 122 - 124
  • [10] Defining operational taxonomic units using DNA barcode data
    Blaxter, M
    Mann, J
    Chapman, T
    Thomas, F
    Whitton, C
    Floyd, R
    Abebe, E
    [J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) : 1935 - 1943