A New L-Proline Amide Hydrolase with Potential Application within the Amidase Process

被引:1
作者
Martinez-Rodriguez, Sergio [1 ,2 ]
Contreras-Montoya, Rafael [3 ]
Torres, Jesus M. [1 ]
de Cienfuegos, Luis alvarez [3 ]
Gavira, Jose Antonio [2 ]
机构
[1] Univ Granada, Dept Biochem & Mol Biol & Immunol 3, Granada 18071, Spain
[2] Univ Granada, CSIC, Andalusian Inst Earth Sci, Lab Crystallog Studies, Ave Palmeras 4, Granada 18100, Spain
[3] Univ Granada, Dept Organ Chem, Granada 18071, Spain
关键词
amidase; amino acid; amidase process; proline; aminopeptidase; S33; family; BROAD SUBSTRATE-SPECIFICITY; AMINO-ACID AMIDES; PROLYL AMINOPEPTIDASE; CRYSTAL-STRUCTURE; PURIFICATION; IMINOPEPTIDASE; RECOGNITION; REFINEMENT; RESOLUTION; MECHANISM;
D O I
10.3390/cryst12010018
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
L-proline amide hydrolase (PAH, EC 3.5.1.101) is a barely described enzyme belonging to the peptidase S33 family, and is highly similar to prolyl aminopeptidases (PAP, EC. 3.4.11.5). Besides being an S-stereoselective character towards piperidine-based carboxamides, this enzyme also hydrolyses different L-amino acid amides, turning it into a potential biocatalyst within the Amidase Process. In this work, we report the characterization of L-proline amide hydrolase from Pseudomonas syringae (PsyPAH) together with the first X-ray structure for this class of L-amino acid amidases. Recombinant PsyPAH showed optimal conditions at pH 7.0 and 35 degrees C, with an apparent thermal melting temperature of 46 degrees C. The enzyme behaved as a monomer at the optimal pH. The L-enantioselective hydrolytic activity towards different canonical and non-canonical amino-acid amides was confirmed. Structural analysis suggests key residues in the enzymatic activity.
引用
收藏
页数:16
相关论文
共 56 条
[1]   Towards automated crystallographic structure refinement with phenix.refine [J].
Afonine, Pavel V. ;
Grosse-Kunstleve, Ralf W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Moriarty, Nigel W. ;
Mustyakimov, Marat ;
Terwilliger, Thomas C. ;
Urzhumtsev, Alexandre ;
Zwart, Peter H. ;
Adams, Paul D. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2012, 68 :352-367
[2]  
[Anonymous], PYMOL MOL GRAPHICS S
[3]  
Asano Y., 2007, L-Amino Acid Amide Asymmetric Hydrolase and Dna Encoding the Same, Patent No. [EP1770166A4, 1770166]
[4]   Phaser.MRage: automated molecular replacement [J].
Bunkoczi, Gabor ;
Echols, Nathaniel ;
McCoy, Airlie J. ;
Oeffner, Robert D. ;
Adams, Paul D. ;
Read, Randy J. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2013, 69 :2276-2286
[5]   MolProbity: all-atom structure validation for macromolecular crystallography [J].
Chen, Vincent B. ;
Arendall, W. Bryan, III ;
Headd, Jeffrey J. ;
Keedy, Daniel A. ;
Immormino, Robert M. ;
Kapral, Gary J. ;
Murray, Laura W. ;
Richardson, Jane S. ;
Richardson, David C. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :12-21
[6]   Features and development of Coot [J].
Emsley, P. ;
Lohkamp, B. ;
Scott, W. G. ;
Cowtan, K. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2010, 66 :486-501
[7]   PREPARATION AND PROPERTIES OF 2 NEW CHROMOGENIC SUBSTRATES OF TRYPSIN [J].
ERLANGER, BF ;
COHEN, W ;
KOKOWSKY, N .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1961, 95 (02) :271-&
[8]   Convenient green preparation of dipeptides using unprotected α-amino acids [J].
Ezawa, Tetsuya ;
Jung, Seunghee ;
Kawashima, Yuya ;
Noguchi, Takuya ;
Imai, Nobuyuki .
TETRAHEDRON-ASYMMETRY, 2017, 28 (01) :75-83
[9]   X-ray snapshots of peptide processing in mutants of tricorn-interacting factor F1 from Thermoplasma acidophilum [J].
Goettig, P ;
Brandstetter, H ;
Groll, M ;
Göhring, W ;
Konarev, PV ;
Svergun, DI ;
Huber, R ;
Kim, JS .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (39) :33387-33396
[10]   Structures of the tricorn-interacting aminopeptidase F1 with different ligands explain its catalytic mechanism [J].
Goettig, P ;
Groll, M ;
Kim, JS ;
Huber, R ;
Brandstetter, H .
EMBO JOURNAL, 2002, 21 (20) :5343-5352