In silico genome-wide screening for TnrA-regulated genes of Bacillus clausii

被引：0

作者：

Farazmand, Abbas ^{[1
,2
]}

Yakhchali, Bagher ^{[1
]}

Shariati, Parvin ^{[1
]}

Minuchehr, Zarrin ^{[1
]}

Ofoghi, Hamideh ^{[2
]}

机构：

[1] NIGEB, Dept Ind & Environm Biotechnol, Tehran, Iran

[2] IROST, Dept Biotechnol, Tehran, Iran

来源：

IRANIAN JOURNAL OF BIOTECHNOLOGY | 2012年 / 10卷 / 01期

关键词：

Gene regulation; TnrA; Bacillus clausii; nitrogen metabolism; SUBTILIS; EXPRESSION;

D O I：

暂无

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Bacillus clausii TnrA transcription factor is required for global nitrogen regulation. In order to obtain an overview of gene regulation by TnrA in B. clausii KSM-K16, the entire genome of B. clausii was screened for the consensus sequence, 5'-TGTNAN7TNACA-3' known as the TnrA box, and 13 transcription units were found containing a putative TnrA box. The TnrA targets identified in this study were tnrA, glnA, nrgA, nasFDEB, puc genes, licT, the two operons of the oligopeptide ABC transporter, lytR, transcriptional regulator of the Lrp/AsnC family, sodium-dependent transporter of SNF family, hyu genes and a biochemically uncharacterized protein.

引用

页码：61 / 65

页数：5

共 50 条

[31] Genome-wide In Vivo CNS Screening Identifies Genes that Modify CNS Neuronal Survival and mHTT Toxicity [J].

Wertz, Mary H. ;

Mitchem, Mollie R. ;

Pineda, S. Sebastian ;

Hachigian, Lea J. ;

Lee, Hyeseung ;

Lau, Vanessa ;

Powers, Alex ;

Kulicke, Ruth ;

Madan, Gurrein K. ;

Colic, Medina ;

Therrien, Martine ;

Vernon, Amanda ;

Beja-Glasser, Victoria F. ;

Hegde, Mudra ;

Gao, Fan ;

Kellis, Manolis ;

Hart, Traver ;

Doench, John G. ;

Heiman, Myriam .

NEURON, 2020, 106 (01) :76-+

[32] Genome-wide identification and analysis of nuclear receptors genes for lethal screening against Bemisia tabaci Q [J].

He, Chao ;

Liu, Shaonan ;

Liang, Jinjin ;

Zeng, Yang ;

Wang, Shaoli ;

Wu, Qingjun ;

Xie, Wen ;

Zhang, Youjun .

PEST MANAGEMENT SCIENCE, 2020, 76 (06) :2040-2048

[33] Genetic Screening of New Genes Responsible for Cellular Adaptation to Hypoxia Using a Genome-Wide shRNA Library [J].

Yoshino, Seiko ;

Hara, Toshiro ;

Weng, Jane S. ;

Takahashi, Yuka ;

Seiki, Motoharu ;

Sakamoto, Takeharu .

PLOS ONE, 2012, 7 (04)

[34] Genome-Wide Identification and In Silico Analysis of ZF-HD Transcription Factor Genes in Zea mays L. [J].

Ul Islam, Md. Abir ;

Nupur, Juthy Abedin ;

Bin Khalid, Muhammad Hayder ;

Din, Atta Mohi Ud ;

Shafiq, Muhammad M. ;

Alshegaihi, Rana ;

Ali, Qurban ;

Kamran, Zuha ;

Manzoor, Mujahid ;

Haider, Muhammad Saleem ;

Shahid, Muhammad Adnan ;

Manghwar, Hakim .

GENES, 2022, 13 (11)

[35] The Role of α-CTD in the Genome-Wide Transcriptional Regulation of the Bacillus subtilis Cells [J].

Murayama, Satohiko ;

Ishikawa, Shu ;

Chumsakul, Onuma ;

Ogasawara, Naotake ;

Oshima, Taku .

PLOS ONE, 2015, 10 (07)

[36] Genome-wide identification and classification of MYB superfamily genes in peach [J].

Zhang, Chunhua ;

Ma, Ruijuan ;

Xu, Jianlan ;

Yan, Juan ;

Guo, Lei ;

Song, Juan ;

Feng, Ruchao ;

Yu, Mingliang .

PLOS ONE, 2018, 13 (06)

[37] Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice [J].

Li, Na ;

Wang, Yang ;

Lu, Jing ;

Liu, Chuan .

INTERNATIONAL JOURNAL OF GENOMICS, 2019, 2019

[38] Genome-wide analysis of superoxide dismutase genes in Larix kaempferi [J].

Han, Xue-Min ;

Chen, Qiang-Xin ;

Yang, Qi ;

Zeng, Qing-Yin ;

Lan, Ting ;

Liu, Yan-Jing .

GENE, 2019, 686 :29-36

[39] Genome-wide identification and characterization of WOX genes in Cucumis sativus [J].

Han, Ni ;

Tang, Rui ;

Chen, Xueqian ;

Xu, Zhixuan ;

Ren, Zhonghai ;

Wang, Lina .

GENOME, 2021, 64 (08) :761-776

[40] Genome-Wide Mapping of Furfural Tolerance Genes in Escherichia coli [J].

Glebes, Tirzah Y. ;

Sandoval, Nicholas R. ;

Reeder, Philippa J. ;

Schilling, Katherine D. ;

Zhang, Min ;

Gill, Ryan T. .

PLOS ONE, 2014, 9 (01)

← 1 2 3 4 5 →