In silico genome-wide screening for TnrA-regulated genes of Bacillus clausii

被引：0
作者：
Farazmand, Abbas [1 ,2 ]
Yakhchali, Bagher [1 ]
Shariati, Parvin [1 ]
Minuchehr, Zarrin [1 ]
Ofoghi, Hamideh [2 ]
机构：
[1] NIGEB, Dept Ind & Environm Biotechnol, Tehran, Iran
[2] IROST, Dept Biotechnol, Tehran, Iran
来源：
IRANIAN JOURNAL OF BIOTECHNOLOGY | 2012年 / 10卷 / 01期
关键词：
Gene regulation; TnrA; Bacillus clausii; nitrogen metabolism; SUBTILIS; EXPRESSION;
D O I：
暂无
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
Bacillus clausii TnrA transcription factor is required for global nitrogen regulation. In order to obtain an overview of gene regulation by TnrA in B. clausii KSM-K16, the entire genome of B. clausii was screened for the consensus sequence, 5'-TGTNAN7TNACA-3' known as the TnrA box, and 13 transcription units were found containing a putative TnrA box. The TnrA targets identified in this study were tnrA, glnA, nrgA, nasFDEB, puc genes, licT, the two operons of the oligopeptide ABC transporter, lytR, transcriptional regulator of the Lrp/AsnC family, sodium-dependent transporter of SNF family, hyu genes and a biochemically uncharacterized protein.
引用
收藏
页码：61 / 65
页数：5
相关论文
共 50 条
[21]   Genome-wide analysis of Ollier disease: Is it all in the genes? [J].
Pansuriya, Twinkal C. ;
Oosting, Jan ;
Krenacs, Tibor ;
Taminiau, Antonie H. M. ;
Verdegaal, Suzan H. M. ;
Sangiorgi, Luca ;
Sciot, Raf ;
Hogendoorn, Pancras C. W. ;
Szuhai, Karoly ;
Bovee, Judith V. M. G. .
ORPHANET JOURNAL OF RARE DISEASES, 2011, 6
[22]   Genome-wide Identification and Characterization of Expansin Genes in Jute [J].
Hossain, Md Sabbir ;
Ahmed, Borhan ;
Ullah, Md. Wali ;
Haque, Md. Samiul ;
Islam, Md. Shahidul .
TROPICAL PLANT BIOLOGY, 2022, 15 (01) :40-54
[23]   Genome-wide identification and evolution of HECT genes in wheat [J].
Meng, Xianwen ;
Yang, Ting ;
Liu, Jing ;
Zhao, Mingde ;
Wang, Jiuli .
PEERJ, 2020, 8
[24]   Genome-Wide Screening for Lectin Motifs in Arabidopsis thaliana [J].
Eggermont, Lore ;
Verstraeten, Bruno ;
Van Damme, Els J. M. .
PLANT GENOME, 2017, 10 (02)
[25]   Integrative In Silico Analysis of Genome-Wide DNA Methylation Profiles in Schizophrenia [J].
Forero, Diego A. ;
Gonzalez-Giraldo, Yeimy .
JOURNAL OF MOLECULAR NEUROSCIENCE, 2020, 70 (11) :1887-1893
[26]   GENOME-WIDE ANALYSIS OF ETHYLENE RESPONSIVE FACTOR IN MAIZE: AN IN SILICO APPROACH [J].
Hussain, A. ;
Shahid, M. ;
Mustafa, G. ;
Azeem, M. ;
Shaheen, H. L. ;
Sultan, S. ;
Hussain, S. ;
Ahmed, I. .
APPLIED ECOLOGY AND ENVIRONMENTAL RESEARCH, 2016, 14 (05) :177-200
[27]   Combining optimization and machine learning techniques for genome-wide prediction of human cell cycle-regulated genes [J].
De Santis, Marianna ;
Rinaldi, Francesco ;
Falcone, Emmanuela ;
Lucidi, Stefano ;
Piaggio, Giulia ;
Gurtner, Aymone ;
Farina, Lorenzo .
BIOINFORMATICS, 2014, 30 (02) :228-233
[28]   Methylation screening of reciprocal genome-wide UPDs identifies novel human-specific imprinted genes [J].
Nakabayashi, Kazuhiko ;
Martin Trujillo, Alex ;
Tayama, Chiharu ;
Camprubi, Cristina ;
Yoshida, Wataru ;
Lapunzina, Pablo ;
Sanchez, Aurora ;
Soejima, Hidenobu ;
Aburatani, Hiroyuki ;
Nagae, Genta ;
Ogata, Tsutomu ;
Hata, Kenichiro ;
Monk, David .
HUMAN MOLECULAR GENETICS, 2011, 20 (16) :3188-3197
[29]   Genome-wide screening and characterization of phospholipase A (PLA)-like genes in sorghum (Sorghum bicolor L.) [J].
Sapara, Vidhi J. ;
Shankhapal, Aishwarya R. ;
Reddy, Palakolanu Sudhakar .
PLANTA, 2024, 260 (02)
[30]   Genome-wide In Vivo CNS Screening Identifies Genes that Modify CNS Neuronal Survival and mHTT Toxicity [J].
Wertz, Mary H. ;
Mitchem, Mollie R. ;
Pineda, S. Sebastian ;
Hachigian, Lea J. ;
Lee, Hyeseung ;
Lau, Vanessa ;
Powers, Alex ;
Kulicke, Ruth ;
Madan, Gurrein K. ;
Colic, Medina ;
Therrien, Martine ;
Vernon, Amanda ;
Beja-Glasser, Victoria F. ;
Hegde, Mudra ;
Gao, Fan ;
Kellis, Manolis ;
Hart, Traver ;
Doench, John G. ;
Heiman, Myriam .
NEURON, 2020, 106 (01) :76-+
12345