Directional Dependence of Hydrogen Bonds: A Density-Based Energy Decomposition Analysis and Its Implications on Force Field Development

被引:34
|
作者
Lu, Zhenyu [1 ]
Zhou, Nengjie [1 ]
Wu, Qin [2 ]
Zhang, Yingkai [1 ]
机构
[1] NYU, Dept Chem, New York, NY 10003 USA
[2] Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA
关键词
MOLECULAR-DYNAMICS SIMULATIONS; FRAGMENT POTENTIAL METHOD; FUNCTIONAL THEORY; COMPUTATIONAL CHEMISTRY; POLARIZABLE MODEL; ATOMIC CHARGES; HARTREE-FOCK; M06; SUITE; MECHANICS; PROTEINS;
D O I
10.1021/ct2003226
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
One well-known shortcoming of widely used biomolecular force fields is the description of the directional dependence of hydrogen bonding (HB). Here we aim to better understand the origin of this difficulty and thus provide some guidance for further force field development. Our theoretical approaches center on a novel density-based energy decomposition analysis (DEDA) method (J. Chem. Phys. 2009, 131, 164112), in which the frozen density energy is variationally determined through constrained search. This unique and most significant feature of DEDA enables us to find that the frozen density interaction term is the key factor in determining the FIB orientation, while the sum of polarization and charge-transfer components shows very little HB directional dependence. This new insight suggests that the difficulty for current nonpolarizable force fields to describe the HB directional dependence is not due to the lack of explicit polarization or charge-transfer terms. Using the DEDA results as reference, we further demonstrate that the main failure coming from the atomic point charge model can be overcome largely by introducing extra charge sites or higher order multipole moments. Among all the electrostatic models explored, the smeared charge distributed multipole model (up to quadrupole), which also takes account of charge penetration effects, gives the best agreement with the corresponding DEDA results. Meanwhile, our results indicate that the van der Waals interaction term needs to be further improved to better model directional HB.
引用
收藏
页码:4038 / 4049
页数:12
相关论文
共 3 条
  • [1] Variational nature of the frozen density energy in density-based energy decomposition analysis and its application to torsional potentials
    Wu, Qin
    JOURNAL OF CHEMICAL PHYSICS, 2014, 140 (24)
  • [2] Density-based energy decomposition analysis for intermolecular interactions with variationally determined intermediate state energies
    Wu, Qin
    Ayers, Paul W.
    Zhang, Yingkai
    JOURNAL OF CHEMICAL PHYSICS, 2009, 131 (16)
  • [3] Development of an Advanced Force Field for Water Using Variational Energy Decomposition Analysis
    Das, Akshaya K.
    Urban, Lars
    Leven, Itai
    Loipersberger, Matthias
    Aldossary, Abdulrahman
    Head-Gordon, Martin
    Head-Gordon, Teresa
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2019, 15 (09) : 5001 - 5013