Population Genetic Structure of the Bean Leaf Beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda

Simple Summary The bean leaf beetle (Ootheca mutabilis) has lately emerged as a major bean pest in Uganda, causing devastating crop losses. Despite its importance, little is known about its population genetic structure. We developed microsatellite DNA markers and combined them with partial mito-chondrial cytochrome oxidase subunit I gene sequences as a marker to examine the spatial pop-ulation genetic structure of 86 O. mutabilis samples from 16 populations. We developed a set of five highly polymorphic microsatellite DNA markers. From both types of markers, nearly all the genetic variation occurred within populations and there was no evidence of genetic differentiation in both markers. There was no isolation by distance between geographical and genetic distances for both markers except in one of the agro-ecological zones for mtCOI data. This information will assist in the design of O. mutabilis control strategies. Bean leaf beetle (BLB) (Ootheca mutabilis) has emerged as an important bean pest in Uganda, leading to devastating crop losses. There is limited information on the population genetic structure of BLB despite its importance. In this study, novel microsatellite DNA markers and the partial mitochondrial cytochrome oxidase subunit I (mtCOI) gene sequences were used to analyze the spatial population genetic structure, genetic differentiation and haplotype diversity of 86 O. mutabilis samples from 16 (districts) populations. We identified 19,356 simple sequence repeats (SSRs) (mono, di-, tri-, tetra-, penta-, and hexa-nucleotides) of which 81 di, tri and tetra-nucleotides were selected for primer synthesis. Five highly polymorphic SSR markers (4-21 alleles, heterozygosity 0.59-0.84, polymorphic information content (PIC) 50.13-83.14%) were used for this study. Analyses of the 16 O. mutabilis populations with these five novel SSRs found nearly all the genetic variation occurring within populations and there was no evidence of genetic differentiation detected for both types of markers. Also, there was no evidence of isolation by distance between geographical and genetic distances for SSR data and mtCOI data except in one agro-ecological zone for mtCOI data. Bayesian clustering identified a signature of admixture that suggests genetic contributions from two hypothetical ancestral genetic lineages for both types of markers, and the minimum-spanning haplotype network showed low differentiation in minor haplotypes from the most common haplotype with the most common haplotype occurring in all the 16 districts. A lack of genetic differentiation indicates unrestricted migrations between populations. This information will contribute to the design of BLB control strategies.