Deep Learning-Based Detection Method for Mitosis in Living Cells

被引:2
作者
Ke Baosheng [1 ,2 ,3 ]
Li Ying [1 ,2 ,3 ]
Ren Zhenbo [1 ,2 ,3 ]
Di Jianglei [1 ,2 ,3 ]
Zhao Jianlin [1 ,2 ,3 ]
机构
[1] Northwestern Polytech Univ, Sch Phys Sci & Technol, Xian 710129, Shaanxi, Peoples R China
[2] Shaanxi Key Lab Opt Informat Technol, Xian 710129, Shaanxi, Peoples R China
[3] Minist Educ, Key Lab Mat Phys & Chem Extraordinary Condit, Xian 710129, Shaanxi, Peoples R China
关键词
imaging systems; living cell; mitosis; deep learning; object detection algorithm; bright field microscopic imaging;
D O I
10.3788/AOS202141.1511001
中图分类号
O43 [光学];
学科分类号
070207 ; 0803 ;
摘要
Owing to the spatiotemporal randomness of mitosis, the automatic identification and accurate location of mitosis in living cells are challenging tasks for researchers. Herein, a deep learning-based detection method was proposed to automatically identify and locate mitosis in living cells. Here, we built a deep neural network called DetectNet by improving the backbone network of YOLOv3 and introducing an attention mechanism. Under the condition of bright-field microscopic imaging, multiscale images of living cells were acquired and then a dataset was constructed to train the network. The trained network DetectNet was compared with multiple object detection algorithms, and its effectiveness was verified. Experimental results show that aiming at the bright-field microscopic images, DetectNet can directly identify and locate mitosis from the multiscale live cell images with a large field, achieving a higher detection accuracy and faster detection speed compared with other multiple object detection algorithms. Thus, DetectNet shows a great potential application value in the fields of biology and medicine.
引用
收藏
页数:10
相关论文
共 28 条
[1]  
Chen C., 2019, J LASER OPTOELECTRON, V56
[2]   Bacterial colony counting with Convolutional Neural Networks in Digital Microbiology Imaging [J].
Ferrari, Alessandro ;
Lombardi, Stefano ;
Signoroni, Alberto .
PATTERN RECOGNITION, 2017, 61 :629-640
[3]   Fast R-CNN [J].
Girshick, Ross .
2015 IEEE INTERNATIONAL CONFERENCE ON COMPUTER VISION (ICCV), 2015, :1440-1448
[4]   Rich feature hierarchies for accurate object detection and semantic segmentation [J].
Girshick, Ross ;
Donahue, Jeff ;
Darrell, Trevor ;
Malik, Jitendra .
2014 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2014, :580-587
[5]  
He K., 2017, IEEE INT C COMPUT VI, P2961, DOI [10.1109/iccv.201, DOI 10.1109/ICCV.2017.322]
[6]   Deep Residual Learning for Image Recognition [J].
He, Kaiming ;
Zhang, Xiangyu ;
Ren, Shaoqing ;
Sun, Jian .
2016 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2016, :770-778
[7]  
Hu J, 2018, PROC CVPR IEEE, P7132, DOI [10.1109/TPAMI.2019.2913372, 10.1109/CVPR.2018.00745]
[8]   Automated Mitosis Detection of Stem Cell Populations in Phase-Contrast Microscopy Images [J].
Huh, Seungil ;
Ker, Dai Fei Elmer ;
Bise, Ryoma ;
Chen, Mei ;
Kanade, Takeo .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2011, 30 (03) :586-596
[9]   Deep Learning for Semantic Segmentation vs. Classification in Computational Pathology: Application to Mitosis Analysis in Breast Cancer Grading [J].
Jimenez, Gabriel ;
Racoceanu, Daniel .
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 2019, 7 (JUN)
[10]  
KAMAN EJ, 1984, CYTOMETRY, V5, P244, DOI 10.1002/cyto.990050305